Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 8.8e-173 610.1 297 100.0
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.9e-82 310.1 302 62.6
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.5e-63 247.3 352 46.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 4.5e-60 235.7 335 45.4
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 4.2e-58 229.2 347 43.2
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.7e-55 218.8 344 42.4
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-54 217.6 344 42.4
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.2e-54 216.9 354 42.4
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.0e-53 211.8 336 45.2
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.0e-53 211.8 336 45.2
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.0e-51 205.7 319 43.3
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.2e-49 201.1 397 38.3
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 8.2e-46 188.3 386 37.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.1e-45 188.0 396 36.9
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.1e-45 184.9 303 39.9
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.6e-44 184.1 323 37.5
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 4.5e-44 182.6 303 39.9
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.9e-43 179.9 379 37.5
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.5e-42 176.8 343 38.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 3.2e-42 176.4 335 36.1
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 9.4e-42 174.9 363 36.9
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 9.4e-42 174.9 381 36.5
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.2e-41 174.5 313 39.6
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.1e-41 173.7 383 36.0
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 2.7e-41 173.3 426 34.0
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 8.0e-41 171.8 305 37.7
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.0e-40 171.4 335 39.4
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 4.0e-40 169.5 322 41.0
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 5.2e-40 169.1 326 39.9
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.8e-38 163.3 362 35.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 6.3e-38 162.2 252 45.6
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-37 161.4 307 39.1
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-37 161.4 307 39.1
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 5.3e-37 159.1 395 35.4
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 7.0e-37 158.7 366 36.6
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 7.0e-37 158.7 364 34.1
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 9.1e-37 158.3 424 33.7
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.7e-36 156.8 369 36.6
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.7e-35 154.1 246 43.5
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-35 153.7 397 33.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.2e-35 153.7 377 35.5
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 2.2e-35 153.7 335 35.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.5e-34 151.0 404 33.2
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.5e-34 151.0 403 33.0
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.9e-34 150.6 376 34.8
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.9e-34 150.6 389 34.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.9e-34 150.6 405 33.1
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.5e-34 150.2 354 35.3
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.2e-34 149.4 405 32.8
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.2e-33 147.9 405 33.3
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.6e-33 147.5 354 33.9
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.1e-33 147.1 349 36.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.7e-33 146.0 348 33.9
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 6.1e-33 145.6 274 38.7
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 8.0e-33 145.2 397 32.2
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.0e-32 144.8 412 33.7
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.4e-32 144.4 413 32.4
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.8e-32 144.1 389 33.9
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.8e-32 144.1 403 32.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.3e-32 143.7 354 35.3
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 4.0e-32 142.9 391 34.0
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.2e-32 142.5 303 36.6
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 5.2e-32 142.5 356 35.1
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 5.7e-31 139.0 300 37.0
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 7.5e-31 138.7 241 42.7
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 9.8e-31 138.3 324 35.5
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 9.8e-31 138.3 216 44.9
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-30 137.9 321 35.5
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-30 137.9 321 35.5
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 6.3e-30 135.6 378 33.9
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.1e-29 134.8 324 35.8
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-29 134.4 276 36.6
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.4e-29 133.7 376 34.0
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.4e-29 133.7 376 34.0
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.4e-29 133.7 333 35.4
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 5.4e-29 132.5 360 33.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 9.1e-29 131.7 263 38.4
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-28 131.3 324 37.3
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.2e-28 131.3 324 37.3
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 5.9e-28 129.0 390 32.1
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 5.9e-28 129.0 351 35.0
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.0e-27 128.3 372 31.2
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.7e-27 127.5 407 32.7
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.3e-27 127.1 247 38.1
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.9e-27 126.7 360 32.5
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-26 124.8 267 37.8
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-26 124.8 343 32.4
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-26 124.4 351 32.8
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-26 124.4 351 32.8
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.9e-26 124.0 387 30.7
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 7.2e-26 122.1 397 29.7
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 9.5e-26 121.7 303 34.3
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.2e-25 121.3 241 38.2
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.2e-25 121.3 376 31.9
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.8e-25 120.2 235 38.7
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 3.6e-25 119.8 247 40.1
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.6e-25 119.8 327 31.5
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 3.6e-25 119.8 327 31.5
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 8.0e-25 118.6 307 33.9
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.0e-24 118.2 238 36.6
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-24 118.2 367 31.1
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.0e-24 118.2 329 32.8
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-24 117.5 398 28.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.0e-24 116.7 306 33.3
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.0e-24 116.7 306 33.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 6.8e-24 115.5 222 38.7
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 4.4e-23 112.8 279 34.8
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 4.4e-23 112.8 317 33.4
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.3e-22 111.3 271 35.8
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.3e-22 111.3 369 32.2
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-22 110.9 187 39.6
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.2e-22 110.5 185 39.5
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.8e-22 110.2 269 34.9
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.7e-22 109.8 377 29.7
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.9e-22 109.4 333 30.6
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.4e-21 107.8 205 37.1
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 3.2e-21 106.7 243 35.0
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 3.2e-21 106.7 243 35.0
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 3.2e-21 106.7 243 35.0
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.2e-21 106.7 249 36.5
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 5.4e-21 105.9 187 38.5
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 9.2e-21 105.1 247 38.9
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 5.9e-20 102.4 204 37.3
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 7.8e-20 102.1 292 32.9
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.3e-19 100.5 239 33.5
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.9e-19 100.1 204 36.8
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 5.0e-19 99.4 112 53.6
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 8.6e-19 98.6 217 34.6
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-18 98.2 239 33.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 5.6e-18 95.9 246 32.1
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 2.8e-17 93.6 221 35.3
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 3.6e-17 93.2 222 33.8
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.4e-16 91.3 335 28.7
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.8e-16 90.9 260 32.7
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 3.1e-16 90.1 240 33.3
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 4.0e-16 89.7 245 33.9
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 6.8e-16 89.0 249 31.3
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 7.5e-15 85.5 333 28.8
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.7e-14 84.3 251 33.1
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 4.9e-14 82.8 195 35.4
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 8.3e-14 82.0 227 31.3
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.4e-13 81.3 217 33.2
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 2.0e-12 77.4 256 30.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 3.5e-12 76.6 109 48.6
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.6e-09 66.6 127 37.8
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.1e-08 65.1 79 50.6
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.4e-08 64.7 211 31.8
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.3e-08 63.9 190 31.1
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 4.0e-08 63.2 243 30.5
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.4e-07 59.7 104 42.3
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 4.4e-07 59.7 211 27.0


User provided reference genes

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