Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 3.5e-76 288.1 137 100.0
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.0e-51 205.3 119 84.9
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 2.2e-38 162.5 118 66.1
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.6e-36 156.4 118 65.3
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.6e-36 156.4 117 65.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 3.6e-36 155.2 117 64.1
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.6e-36 155.2 118 62.7
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 6.1e-36 154.5 118 62.7
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.4e-35 153.3 118 61.9
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.8e-35 152.9 118 61.9
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.8e-35 152.9 118 61.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 3.0e-35 152.1 117 64.1
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 3.9e-35 151.8 118 61.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 6.7e-35 151.0 118 60.2
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.1e-34 150.2 118 60.2
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.5e-34 149.8 119 58.0
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 2.0e-34 149.4 118 60.2
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 2.6e-34 149.1 119 57.1
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 3.3e-34 148.7 118 60.2
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 7.4e-34 147.5 119 58.8
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 7.4e-34 147.5 119 58.8
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 7.4e-34 147.5 118 59.3
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 7.4e-34 147.5 117 60.7
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.3e-33 146.7 118 59.3
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.7e-33 146.4 118 59.3
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.2e-33 146.0 119 58.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.2e-33 146.0 117 59.0
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.2e-33 146.0 117 59.0
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.2e-33 146.0 118 59.3
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.2e-33 146.0 119 58.0
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 2.8e-33 145.6 118 59.3
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 2.8e-33 145.6 119 55.5
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.8e-33 145.6 117 59.8
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 2.8e-33 145.6 118 61.0
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.7e-33 145.2 119 58.0
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 3.7e-33 145.2 117 59.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.7e-33 145.2 118 59.3
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 4.8e-33 144.8 119 59.7
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 4.8e-33 144.8 115 60.9
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 4.8e-33 144.8 119 59.7
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 4.8e-33 144.8 116 62.1
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 4.8e-33 144.8 119 58.0
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 4.8e-33 144.8 117 59.8
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 6.3e-33 144.4 118 60.2
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 6.3e-33 144.4 118 58.5
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 8.2e-33 144.1 118 57.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.1e-32 143.7 117 59.0
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.1e-32 143.7 115 58.3
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.1e-32 143.7 117 57.3
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-32 143.7 117 59.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.4e-32 143.3 122 55.7
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.4e-32 143.3 115 61.7
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.4e-32 143.3 117 59.8
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.4e-32 143.3 118 55.9
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.4e-32 143.3 117 55.6
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.4e-32 143.3 118 60.2
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.8e-32 142.9 118 59.3
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.8e-32 142.9 118 56.8
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.8e-32 142.9 117 57.3
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.8e-32 142.9 119 57.1
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.4e-32 142.5 117 59.0
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.4e-32 142.5 117 58.1
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.4e-32 142.5 118 59.3
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.4e-32 142.5 118 59.3
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 3.1e-32 142.1 115 60.9
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 3.1e-32 142.1 117 58.1
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 3.1e-32 142.1 117 55.6
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 3.1e-32 142.1 116 59.5
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 3.1e-32 142.1 117 57.3
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.1e-32 142.1 115 60.0
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.1e-32 141.7 119 57.1
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 4.1e-32 141.7 117 58.1
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 5.3e-32 141.4 118 56.8
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 5.3e-32 141.4 117 59.0
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.0e-32 141.0 119 55.5
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 7.0e-32 141.0 118 55.9
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 7.0e-32 141.0 118 57.6
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 9.1e-32 140.6 118 56.8
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 9.1e-32 140.6 117 54.7
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 9.1e-32 140.6 117 56.4
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 9.1e-32 140.6 116 56.9
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 9.1e-32 140.6 118 56.8
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.2e-31 140.2 118 55.1
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.2e-31 140.2 117 56.4
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 1.5e-31 139.8 118 55.9
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.0e-31 139.4 117 55.6
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.0e-31 139.4 118 56.8
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 2.6e-31 139.0 118 55.1
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 2.6e-31 139.0 118 56.8
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.6e-31 139.0 118 55.9
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.5e-31 138.7 118 54.2
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.5e-31 138.7 118 57.6
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 3.5e-31 138.7 117 53.8
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.5e-31 138.7 117 54.7
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 7.7e-31 137.5 118 55.9
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 7.7e-31 137.5 119 56.3
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 7.7e-31 137.5 115 57.4
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.0e-30 137.1 115 57.4
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.0e-30 137.1 118 55.1
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.0e-30 137.1 118 55.1
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.0e-30 137.1 118 55.1
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.0e-30 137.1 117 59.0
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.0e-30 137.1 119 57.1
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.3e-30 136.7 119 57.1
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.7e-30 136.3 118 55.9
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 6.5e-30 134.4 118 54.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 8.5e-30 134.0 114 58.8
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.4e-29 133.3 119 54.6
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 4.2e-29 131.7 117 54.7
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.7e-28 129.0 119 51.3
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.4e-27 126.7 112 57.1
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.8e-27 126.3 117 52.1
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 1.1e-26 123.6 95 57.9
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.8e-24 116.3 98 58.2
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.6e-23 113.2 119 56.3
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.0e-23 112.8 92 57.6
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 2.6e-23 112.5 118 45.8
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.6e-23 112.5 117 46.2
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.2e-21 105.5 112 44.6
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 5.5e-21 104.8 116 44.0
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 7.2e-21 104.4 78 64.1
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 2.7e-20 102.4 121 45.5
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 2.3e-19 99.4 114 45.6
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 8.8e-19 97.4 112 42.0
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.2e-18 97.1 75 62.7
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.3e-14 83.6 119 38.7
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.5e-13 80.1 95 45.3
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 4.2e-13 78.6 123 39.8
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 3.5e-07 58.9 159 30.8


User provided reference genes

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