Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 8.9e-136 486.9 237 100.0
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.6e-116 421.4 226 88.9
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.1e-114 416.8 232 85.3
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 4.3e-114 414.8 231 85.7
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 5.6e-114 414.5 231 84.0
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-113 413.3 231 85.7
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 3.7e-113 411.8 225 84.9
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.7e-113 411.8 224 87.1
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 3.7e-113 411.8 225 86.7
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 4.8e-113 411.4 224 87.5
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.8e-113 411.4 224 87.1
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.1e-112 410.2 224 86.6
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.1e-112 410.2 224 85.3
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.1e-112 410.2 224 85.7
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.8e-112 409.5 224 83.9
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.8e-112 409.5 225 84.4
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.8e-112 409.5 224 85.3
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 2.4e-112 409.1 224 84.8
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 3.1e-112 408.7 224 85.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 4.0e-112 408.3 219 87.2
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 5.3e-112 407.9 225 85.3
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 5.3e-112 407.9 230 81.7
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 6.9e-112 407.5 222 85.1
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 6.9e-112 407.5 224 84.8
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 9.0e-112 407.1 224 83.5
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 9.0e-112 407.1 223 84.3
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 1.2e-111 406.8 224 84.4
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 83.9
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 2.6e-111 405.6 224 85.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.4e-111 405.2 224 84.8
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 3.4e-111 405.2 224 84.4
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 4.5e-111 404.8 216 86.6
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.5e-111 404.8 224 86.2
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 4.5e-111 404.8 253 76.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 4.5e-111 404.8 222 83.8
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.8e-111 404.4 224 83.0
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 5.8e-111 404.4 224 84.4
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 5.8e-111 404.4 224 84.8
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 5.8e-111 404.4 224 84.8
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 7.6e-111 404.1 231 83.5
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 7.6e-111 404.1 224 82.1
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 9.9e-111 403.7 224 83.9
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 9.9e-111 403.7 224 84.4
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 9.9e-111 403.7 224 82.6
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.3e-110 403.3 223 84.3
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.7e-110 402.9 225 85.3
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-110 402.9 224 83.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.2e-110 402.5 226 83.2
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.2e-110 402.5 222 83.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 3.8e-110 401.7 221 84.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 3.8e-110 401.7 227 81.9
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 4.9e-110 401.4 223 85.2
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 4.9e-110 401.4 224 82.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 4.9e-110 401.4 237 81.4
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.4e-110 401.0 286 72.0
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 8.4e-110 400.6 224 83.9
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.4e-110 400.6 224 83.5
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.9e-109 399.4 219 84.0
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.9e-109 399.4 223 82.1
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.5e-109 399.1 228 82.9
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.5e-109 399.1 224 83.5
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.2e-109 398.3 224 83.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.2e-109 398.3 224 82.6
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.2e-109 398.3 225 82.7
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 5.5e-109 397.9 222 82.4
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 7.1e-109 397.5 224 82.1
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 9.3e-109 397.1 223 83.4
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.6e-108 396.4 231 81.4
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.6e-108 396.4 224 82.6
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 2.1e-108 396.0 221 82.8
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.1e-108 396.0 244 79.1
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.1e-108 396.0 223 83.9
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 3.5e-108 395.2 223 84.3
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 4.6e-108 394.8 224 82.1
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 4.6e-108 394.8 221 82.4
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 6.0e-108 394.4 221 83.7
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 6.0e-108 394.4 224 83.5
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 7.9e-108 394.0 223 83.9
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 7.9e-108 394.0 223 83.9
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 7.9e-108 394.0 223 83.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 7.9e-108 394.0 224 82.6
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.0e-107 393.7 223 83.4
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.3e-107 393.3 224 82.1
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.3e-107 393.3 224 80.8
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.8e-107 392.9 224 83.5
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.8e-107 392.9 223 84.3
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.8e-107 392.9 223 83.9
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 3.0e-107 392.1 224 80.4
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.9e-107 391.7 222 81.5
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 3.9e-107 391.7 223 83.0
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 3.9e-107 391.7 221 83.3
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 8.7e-107 390.6 224 80.8
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.1e-106 390.2 224 80.8
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.1e-106 390.2 223 83.0
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.1e-106 390.2 221 81.9
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.5e-106 389.0 223 83.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.3e-106 388.7 224 82.6
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 3.3e-106 388.7 224 82.6
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 3.3e-106 388.7 210 86.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 7.4e-106 387.5 224 80.8
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.6e-105 386.3 210 85.7
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 1.6e-105 386.3 219 83.1
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.1e-105 386.0 223 79.8
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.8e-105 385.6 220 80.9
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 6.2e-105 384.4 223 82.5
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 6.2e-105 384.4 223 82.5
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.1e-104 383.6 229 79.0
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-104 383.6 223 82.1
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.1e-104 383.6 221 80.1
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.4e-104 383.3 224 82.1
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.8e-104 382.9 223 79.8
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 4.0e-104 381.7 224 79.5
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 6.9e-104 380.9 224 80.8
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 9.0e-104 380.6 221 80.5
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.0e-103 379.4 216 81.0
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 4.2e-101 371.7 216 78.2
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 4.3e-98 361.7 208 83.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 6.3e-97 357.8 220 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.1e-91 338.2 222 69.8
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.1e-90 337.0 222 69.8
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.3e-90 335.1 230 70.4
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 7.7e-87 324.3 221 68.3
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 3.2e-85 318.9 216 67.1
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-79 300.1 153 89.5
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.1e-77 293.9 163 87.7
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.5e-77 292.7 164 86.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 6.1e-76 288.1 160 81.2
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 2.3e-75 286.2 169 76.3
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 1.3e-70 270.4 215 58.6
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.1e-68 261.5 170 75.9
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.8e-65 252.7 131 84.7
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.8e-64 250.0 217 55.3
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 2.7e-60 236.1 209 56.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-56 224.2 130 79.2
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.6e-55 220.3 111 91.9
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 4.5e-55 218.8 216 48.6
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.0e-54 215.3 148 76.4
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.4e-50 202.6 115 76.5
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 7.5e-50 201.4 114 77.2
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.9e-45 186.8 130 63.1
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.7e-38 163.7 87 82.8
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.9e-37 160.2 103 76.7
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.6e-36 157.1 220 38.6
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.9e-32 143.7 97 75.3
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.5e-29 131.3 66 89.4
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 3.6e-28 129.4 134 51.5
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.2e-28 128.6 78 84.6
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.2e-27 125.6 75 80.0
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.1e-24 117.9 114 51.8
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.9e-24 117.1 61 86.9
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.7e-23 113.2 68 75.0
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.9e-21 107.1 61 88.5
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.6e-20 104.0 61 83.6
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 8.1e-20 101.7 61 85.2
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 3.1e-19 99.8 54 79.6
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 2.0e-18 97.1 64 76.6
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 9.9e-18 94.7 64 73.4
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.6e-15 87.4 54 83.3
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 5.1e-14 82.4 100 43.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.1e-13 81.3 128 43.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.3e-12 77.8 51 72.5
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.2e-09 67.0 39 76.9
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.6e-07 59.3 35 80.0
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 1.0e-06 58.2 44 68.2


User provided reference genes

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