Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 0.0e+00 1258.4 632 100.0
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 5.3e-236 821.2 646 63.3
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 2.5e-233 812.4 645 62.9
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.7e-221 771.9 673 60.9
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.9e-213 745.0 683 55.2
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.7e-211 739.2 641 61.0
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.6e-210 734.6 649 59.0
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 8.6e-210 734.2 649 57.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 6.4e-205 718.0 643 57.9
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-201 707.2 646 56.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.3e-201 704.5 657 56.2
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.2e-200 703.7 641 57.3
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.4e-198 695.3 639 56.8
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-197 693.7 653 56.4
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.7e-197 693.3 655 54.2
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 3.7e-197 692.2 655 54.2
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 3.2e-196 689.1 646 56.0
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 5.4e-196 688.3 665 54.1
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 7.0e-196 688.0 641 54.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.6e-195 685.3 622 57.6
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.0e-194 684.1 642 54.5
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.7e-194 683.3 642 55.1
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 3.0e-194 682.6 643 55.7
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.9e-193 679.9 647 55.3
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.9e-193 679.9 641 53.8
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 4.3e-193 678.7 638 55.2
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 7.3e-193 677.9 645 54.3
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.2e-192 677.2 655 55.6
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 3.6e-192 675.6 643 55.7
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 2.0e-190 669.8 644 54.3
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 4.4e-190 668.7 648 54.3
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 4.1e-188 662.1 651 51.8
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 9.2e-188 661.0 642 54.2
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 9.2e-188 661.0 642 54.4
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.6e-187 660.2 632 54.6
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.7e-187 659.4 641 54.3
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 7.8e-187 657.9 643 53.8
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.7e-186 656.8 643 53.8
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 2.3e-186 656.4 647 52.1
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.3e-186 656.4 639 54.5
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 5.1e-186 655.2 643 54.4
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 4.3e-185 652.1 646 54.0
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 9.5e-185 651.0 644 53.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 3.6e-184 649.0 656 52.4
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.8e-183 646.7 648 54.2
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 6.8e-183 644.8 638 52.5
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.2e-182 644.0 647 53.8
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 2.0e-182 643.3 652 52.8
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.6e-182 642.9 649 52.9
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 4.4e-182 642.1 602 56.5
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.4e-182 642.1 650 52.6
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 9.9e-182 641.0 639 53.8
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.7e-181 640.2 642 52.8
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.1e-180 637.5 604 56.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 5.4e-180 635.2 643 52.3
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 5.4e-180 635.2 637 53.7
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 9.2e-180 634.4 745 48.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 6.0e-179 631.7 644 51.9
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 7.8e-179 631.3 648 51.2
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 3.0e-178 629.4 642 53.0
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.3e-177 625.5 641 52.7
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 5.6e-177 625.2 627 52.2
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 9.6e-177 624.4 650 50.6
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 2.8e-176 622.9 729 47.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 3.6e-176 622.5 621 53.6
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.6e-176 622.5 649 52.1
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 4.7e-176 622.1 643 52.9
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 8.1e-176 621.3 606 52.6
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 8.1e-176 621.3 617 53.2
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 8.1e-176 621.3 643 51.8
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.1e-175 620.9 645 52.1
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.1e-175 620.9 639 51.5
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 1.1e-175 620.9 648 52.2
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.4e-175 620.5 632 52.7
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.4e-174 615.5 646 52.0
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.3e-173 614.0 650 51.7
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 6.4e-173 611.7 644 51.2
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.4e-172 610.5 656 50.9
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 2.4e-172 609.8 639 51.2
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.6e-171 605.5 627 51.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 6.0e-171 605.1 639 51.2
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.7e-170 603.6 595 52.4
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 6.6e-170 601.7 595 52.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.9e-169 600.1 606 52.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.9e-169 600.1 638 50.9
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.4e-167 594.0 623 51.5
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 4.0e-167 592.4 632 50.6
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 9.0e-167 591.3 623 51.4
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.9e-165 586.3 645 49.8
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 4.2e-164 582.4 630 51.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.7e-162 574.7 656 48.9
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 4.3e-161 572.4 646 47.8
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.1e-159 567.8 646 48.9
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.4e-159 567.4 677 47.7
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.1e-159 566.2 669 48.0
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.7e-157 560.5 652 47.7
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.2e-157 560.1 643 47.0
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 5.1e-154 548.9 537 52.3
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.1e-153 547.7 625 48.5
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.1e-143 514.6 652 44.8
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.4e-143 513.5 618 47.1
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 5.0e-141 505.8 634 44.3
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 3.2e-140 503.1 535 50.8
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.6e-139 500.7 605 45.5
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.4e-138 497.7 628 46.3
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 5.3e-135 485.7 630 45.9
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 4.7e-123 446.0 324 64.2
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.2e-116 422.2 417 54.9
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 4.0e-114 416.4 337 58.8
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.8e-114 415.2 416 55.0
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.7e-110 402.1 399 54.4
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-107 394.8 417 52.0
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.1e-107 394.0 416 53.1
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-105 388.3 413 52.5
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-104 384.8 417 52.3
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-101 374.4 405 51.6
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.9e-100 370.9 445 46.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.8e-93 346.7 453 45.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-90 337.0 415 47.5
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.3e-84 316.6 472 40.7
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.6e-78 298.1 207 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 7.8e-78 295.8 502 35.3
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 6.6e-77 292.7 472 39.4
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 4.0e-74 283.5 590 32.0
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.6e-67 260.4 531 33.3
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.4e-65 253.8 579 30.1
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 6.6e-61 239.6 618 29.8
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.8e-59 234.2 256 49.2
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 2.7e-54 217.6 168 61.9
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 4.2e-47 193.7 566 25.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 1.0e-45 189.1 162 58.0
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.5e-41 175.3 245 42.9
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.2e-39 167.5 245 41.6
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.1e-37 160.2 113 70.8
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 6.7e-37 159.8 212 42.5
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 5.3e-34 150.2 136 57.4
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 5.7e-28 130.2 109 59.6
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.4e-26 124.8 97 60.8
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.6e-25 121.3 105 54.3
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 3.2e-23 114.4 85 63.5
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.2e-23 114.4 106 51.9
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.3e-21 108.2 93 55.9
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.3e-20 104.0 80 63.8
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 9.7e-20 102.8 71 69.0
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 9.7e-20 102.8 71 69.0
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 3.1e-18 97.8 87 48.3
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 2.6e-17 94.7 69 66.7
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 7.7e-17 93.2 95 50.5
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 5.5e-15 87.0 176 34.1
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 9.7e-12 76.3 44 75.0
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 9.7e-12 76.3 44 75.0
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 2.2e-11 75.1 157 33.1
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 8.2e-11 73.2 49 67.3
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 3.1e-10 71.2 53 64.2
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 7.2e-07 60.1 181 23.2
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 3.6e-06 57.8 240 26.7
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 6.1e-06 57.0 172 26.2
CAN.G1003.15 Capsicum annuum HOM05D007172 ORTHO05D009267 6.1e-06 57.0 86 34.9
HanXRQChr08g0211761 Helianthus annuus HOM05D005706 ORTHO05D007474 8.0e-06 56.6 180 28.3
Solyc07g005850.3 Solanum lycopersicum HOM05D000001 ORTHO05D000003 8.0e-06 56.6 224 25.0


User provided reference genes

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