Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.7e-77 293.1 337 100.0
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 4.9e-71 272.3 335 97.0
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.5e-67 260.8 335 95.2
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 5.8e-64 248.8 335 93.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.0e-60 238.0 335 91.0
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.0e-60 238.0 351 88.9
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 3.9e-60 236.1 335 90.1
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.9e-59 233.8 351 80.9
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.1e-58 230.3 332 91.9
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.0e-55 221.5 324 92.0
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 6.5e-55 218.8 333 91.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.4e-55 218.4 333 90.7
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.4e-54 217.6 323 91.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.5e-54 216.9 335 80.6
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.5e-54 216.9 327 90.8
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 5.5e-54 215.7 323 91.6
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 7.1e-54 215.3 331 90.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-53 214.5 322 88.8
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.2e-53 214.5 330 90.6
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.6e-53 214.2 328 90.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.1e-53 213.8 326 91.4
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 2.7e-53 213.4 324 90.4
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 2.7e-53 213.4 333 90.1
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.5e-53 213.0 335 89.3
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.6e-53 212.6 330 89.7
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.6e-53 212.6 326 90.5
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 6.0e-53 212.2 328 89.6
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.0e-53 212.2 323 92.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 6.0e-53 212.2 333 90.1
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 6.0e-53 212.2 333 90.1
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 7.9e-53 211.8 321 91.0
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.0e-52 211.5 326 89.9
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.0e-52 211.5 334 89.5
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.3e-52 211.1 328 90.5
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.3e-52 211.1 326 89.0
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.3e-52 210.3 325 90.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.9e-52 209.5 322 89.1
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.9e-52 209.5 329 90.3
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.7e-52 208.8 328 90.9
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 6.7e-52 208.8 321 91.0
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 6.7e-52 208.8 321 88.5
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 6.7e-52 208.8 306 94.1
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 8.7e-52 208.4 325 90.2
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 8.7e-52 208.4 320 87.8
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 8.7e-52 208.4 316 87.7
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.5e-51 207.6 329 89.1
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.5e-51 207.6 329 89.1
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.9e-51 207.2 320 90.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.9e-51 207.2 327 89.6
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.9e-51 207.2 332 89.2
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.5e-51 206.8 332 89.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 3.3e-51 206.5 324 89.5
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 3.3e-51 206.5 324 89.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.3e-51 206.5 326 89.0
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.3e-51 206.1 327 88.7
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.3e-51 206.1 325 89.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.4e-51 205.3 305 93.4
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.4e-51 205.3 325 89.2
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 9.6e-51 204.9 321 91.6
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.3e-50 204.5 325 89.5
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.6e-50 204.1 306 93.5
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.6e-50 204.1 329 88.8
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.6e-50 204.1 324 88.6
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.1e-50 203.8 324 88.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 2.1e-50 203.8 329 88.4
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.8e-50 203.4 340 78.2
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.8e-50 203.4 318 90.6
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.8e-50 203.4 329 86.3
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.8e-50 203.4 323 89.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.8e-50 202.6 320 89.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 4.8e-50 202.6 323 89.2
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 8.2e-50 201.8 328 87.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 8.2e-50 201.8 318 88.4
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 8.2e-50 201.8 356 65.2
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.1e-49 201.4 333 87.1
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.1e-49 201.4 307 93.5
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.1e-49 201.4 325 88.0
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.1e-49 201.4 325 87.7
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.8e-49 200.7 320 88.8
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-49 200.7 293 79.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.8e-49 200.7 327 88.4
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.4e-49 200.3 318 76.7
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.4e-49 200.3 308 89.3
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.4e-49 200.3 305 93.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 3.1e-49 199.9 327 86.5
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 9.0e-49 198.4 322 88.8
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 9.0e-49 198.4 324 86.1
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.2e-48 198.0 326 88.0
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.0e-48 197.2 301 93.4
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 3.4e-48 196.4 326 87.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.4e-48 196.4 247 89.5
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.0e-47 194.9 241 88.8
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.0e-47 194.9 305 91.5
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.8e-47 193.0 326 86.2
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.1e-46 191.4 337 85.8
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.4
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.4
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.8
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.8
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.4e-46 191.0 304 91.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.4e-46 191.0 353 59.5
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.5e-46 190.3 326 87.1
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 3.2e-46 189.9 326 87.4
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.2e-46 189.5 328 86.6
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 4.2e-46 189.5 370 65.9
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.5e-46 189.1 326 87.7
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 9.3e-46 188.3 326 87.1
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 9.3e-46 188.3 298 91.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.2e-45 188.0 308 90.6
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-45 187.6 305 91.1
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-45 187.6 305 91.1
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.6e-45 187.6 326 85.0
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.6e-45 187.6 326 85.0
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.1e-45 187.2 305 91.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.0e-44 184.9 248 87.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.1e-44 182.6 323 83.6
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 8.7e-44 181.8 335 74.0
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.9e-43 180.6 320 74.1
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 7.4e-43 178.7 334 85.6
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 9.7e-43 178.3 327 86.2
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.8e-42 176.8 327 84.7
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.3e-42 175.6 331 69.5
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 6.3e-42 175.6 342 81.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.1e-41 174.9 322 87.0
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.4e-41 174.5 324 72.2
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 2.4e-41 173.7 249 68.7
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.3e-41 172.6 322 87.0
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.2e-40 171.4 307 89.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.5e-40 171.0 230 90.4
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.6e-40 170.2 351 73.2
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.6e-40 170.2 316 87.0
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.4e-40 169.9 333 76.9
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.4e-40 169.9 333 76.9
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.0e-39 168.3 326 71.8
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.5e-38 163.7 307 87.6
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 7.2e-38 162.2 325 81.5
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 7.2e-38 162.2 98 82.7
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 9.4e-38 161.8 314 82.8
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-37 161.4 326 80.4
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.6e-37 159.5 109 72.5
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.6e-37 159.5 109 72.5
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 7.9e-37 158.7 97 79.4
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 7.9e-37 158.7 326 82.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.9e-37 158.7 111 75.7
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.8e-36 157.5 108 75.0
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 3.9e-36 156.4 104 76.9
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.3e-35 153.3 98 77.6
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.3e-35 153.3 98 77.6
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.2e-34 150.6 102 75.5
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.8e-34 150.2 256 77.7
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 6.3e-34 149.1 97 77.3
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.1e-33 148.3 112 70.5
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.8e-33 147.5 81 86.4
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 7.7e-32 142.1 86 80.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.3e-31 141.4 253 76.3
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 6.1e-29 132.5 306 78.1
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.4e-28 131.3 324 75.3
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.6e-27 127.1 75 82.7
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.4e-25 120.6 107 57.0
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-23 114.8 280 79.6
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.3e-18 98.2 120 90.8
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-17 95.1 67 70.1
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.4e-17 94.7 64 60.9
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 3.1e-17 93.6 248 71.4
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.6e-16 91.3 78 62.8
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.0e-16 90.9 64 59.4
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.7e-16 90.5 255 88.6
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 4.5e-16 89.7 120 54.2
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 2.9e-15 87.0 52 76.9
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.6e-13 81.3 77 58.4
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 8.0e-13 79.0 39 89.7
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 8.8e-12 75.5 41 90.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 3.7e-10 70.1 41 82.9
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 3.1e-09 67.0 41 80.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.2e-08 65.1 50 70.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.7e-08 63.9 35 88.6
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 2.2e-07 60.8 35 82.9
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 3.2e-06 57.0 26 96.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 7.2e-06 55.8 31 80.6


User provided reference genes

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