Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.0e-80 302.0 158 100.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 3.2e-42 175.6 161 67.7
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-36 156.8 130 67.7
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.5e-26 122.9 170 48.2
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 7.2e-26 121.3 160 47.5
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.7e-25 118.6 156 51.3
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.8e-24 116.7 134 55.2
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.3e-24 116.3 153 52.3
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.2e-23 114.0 157 51.0
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.4e-23 112.1 144 49.3
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 5.7e-23 111.7 146 54.1
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 5.7e-23 111.7 150 46.7
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 6.3e-22 108.2 105 52.4
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 6.3e-22 108.2 148 45.3
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.3e-22 108.2 154 44.2
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.1e-21 107.5 150 44.7
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.8e-21 106.7 164 44.5
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.8e-21 106.7 179 41.9
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 4.1e-21 105.5 176 42.0
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.1e-21 105.5 123 53.7
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 9.2e-21 104.4 151 45.7
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 9.2e-21 104.4 151 45.0
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 9.2e-21 104.4 137 48.2
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.2e-20 104.0 129 49.6
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-20 103.6 153 46.4
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-20 103.6 170 42.9
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.5e-20 102.4 129 48.8
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.5e-20 102.1 122 50.0
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 4.5e-20 102.1 133 51.9
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 7.8e-20 101.3 166 42.2
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 7.8e-20 101.3 166 42.2
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.0e-19 100.9 166 41.6
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-19 100.5 142 46.5
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-19 100.5 142 46.5
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.3e-19 100.5 142 46.5
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.7e-19 100.1 173 40.5
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.7e-19 100.1 142 46.5
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.3e-19 99.8 139 47.5
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 5.0e-19 98.6 122 49.2
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 5.0e-19 98.6 142 46.5
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.6e-19 98.2 161 41.0
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.6e-19 98.2 186 37.1
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.6e-19 98.2 151 43.7
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.6e-19 98.2 196 39.8
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.1e-18 97.4 113 51.3
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.9e-18 96.7 151 45.7
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 3.3e-18 95.9 170 41.2
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.3e-18 95.9 154 46.1
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 4.3e-18 95.5 110 50.9
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 4.3e-18 95.5 171 39.8
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 4.3e-18 95.5 151 42.4
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.3e-18 95.5 132 46.2
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 4.3e-18 95.5 149 42.3
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 7.3e-18 94.7 153 49.0
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 9.5e-18 94.4 158 41.8
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.5e-18 94.4 156 42.3
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.6e-17 93.6 139 43.9
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.6e-17 93.6 153 44.4
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.8e-17 92.8 137 43.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.8e-17 92.8 120 45.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 2.8e-17 92.8 170 38.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.6e-17 92.4 119 45.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.6e-17 92.4 161 41.6
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 3.6e-17 92.4 157 41.4
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.6e-17 92.4 141 46.1
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 3.6e-17 92.4 131 45.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 8.0e-17 91.3 161 40.4
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 8.0e-17 91.3 175 41.7
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.0e-16 90.9 146 41.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.4e-16 90.5 139 43.9
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-16 90.1 123 44.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.8e-16 90.1 134 46.3
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.8e-16 90.1 139 49.6
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.8e-16 90.1 123 45.5
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.3e-16 89.7 157 40.1
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.3e-16 89.7 138 44.2
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.0e-16 89.4 163 42.9
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.0e-16 89.0 139 44.6
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.0e-16 89.0 167 38.9
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.2e-15 87.4 166 41.6
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.2e-15 87.4 139 42.4
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.5e-15 87.0 141 44.0
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.5e-15 87.0 175 40.6
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 2.6e-15 86.3 151 40.4
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 3.4e-15 85.9 146 44.5
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 3.4e-15 85.9 79 57.0
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 3.4e-15 85.9 130 44.6
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.8e-15 85.1 120 47.5
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 7.5e-15 84.7 155 39.4
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 9.8e-15 84.3 132 45.5
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-14 84.0 130 42.3
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.3e-14 84.0 120 45.8
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.7e-14 83.6 135 43.0
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 2.2e-14 83.2 130 42.3
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 2.2e-14 83.2 161 41.0
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.2e-14 83.2 135 43.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 2.2e-14 83.2 133 45.9
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 2.2e-14 83.2 125 44.8
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.9e-14 82.8 91 51.6
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 2.9e-14 82.8 115 47.8
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 2.9e-14 82.8 130 42.3
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.9e-14 82.8 112 47.3
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.9e-14 82.8 132 41.7
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.7e-14 82.4 134 41.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 8.3e-14 81.3 128 43.8
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 8.3e-14 81.3 94 48.9
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 8.3e-14 81.3 127 41.7
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.4e-13 80.5 126 46.8
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.4e-13 79.7 130 38.5
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.4e-13 79.7 130 38.5
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.4e-13 79.7 126 41.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 3.2e-13 79.3 123 42.3
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.2e-13 79.3 140 41.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 3.2e-13 79.3 104 46.2
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.1e-13 79.0 80 53.8
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.4e-13 78.6 132 40.9
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.0e-13 78.2 122 43.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-12 77.4 76 56.6
SalBow2G0731 Salvia bowleyana HOM05D033521 ORTHO05D004171 1.6e-12 77.0 157 40.8
SalBow2G2016 Salvia bowleyana HOM05D033521 ORTHO05D004171 1.6e-12 77.0 157 40.8
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 2.0e-12 76.6 93 46.2
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 3.5e-12 75.9 122 45.9
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 6.0e-12 75.1 94 44.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 7.8e-12 74.7 71 59.2
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 7.8e-12 74.7 130 43.1
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 7.8e-12 74.7 131 42.0
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 7.8e-12 74.7 131 42.0
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 7.8e-12 74.7 152 37.5
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.0e-11 74.3 95 51.6
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.0e-11 72.8 72 52.8
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.0e-11 72.8 145 37.9
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.0e-11 72.8 174 36.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.0e-11 72.8 120 44.2
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 3.9e-11 72.4 107 41.1
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 3.9e-11 72.4 72 52.8
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 5.0e-11 72.0 80 47.5
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.0e-11 72.0 89 47.2
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.1e-10 70.9 72 56.9
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.1e-10 70.9 68 58.8
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.1e-10 70.9 136 43.4
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.5e-10 70.5 76 46.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.9e-10 70.1 131 42.7
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.9e-10 70.1 92 51.1
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.5e-10 69.7 127 37.8
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.3e-10 69.3 122 43.4
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.3e-10 69.3 108 44.4
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.3e-10 69.3 129 39.5
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 4.3e-10 68.9 79 49.4
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 7.3e-10 68.2 86 45.3
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.5e-10 67.8 84 46.4
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 9.5e-10 67.8 125 39.2
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.2e-09 67.4 77 45.5
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.2e-09 67.4 129 36.4
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.8e-09 66.2 95 42.1
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.8e-09 66.2 85 45.9
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 3.6e-09 65.9 84 46.4
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.7e-09 65.5 118 39.8
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 6.2e-09 65.1 133 38.3
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 6.2e-09 65.1 79 46.8
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 6.2e-09 65.1 123 38.2
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 8.0e-09 64.7 88 46.6
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 8.0e-09 64.7 137 39.4
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 8.0e-09 64.7 84 47.6
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.1e-08 64.3 85 40.0
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.4e-08 63.9 55 61.8
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.3e-08 63.2 160 35.6
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.3e-08 63.2 123 37.4
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.1e-08 62.8 94 50.0
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 6.8e-08 61.6 163 31.9
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 8.9e-08 61.2 92 39.1
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.2e-07 60.8 144 36.8
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.2e-07 60.8 111 39.6
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 1.5e-07 60.5 115 38.3
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 2.6e-07 59.7 129 38.0
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.6e-07 59.7 93 45.2
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 4.4e-07 58.9 108 40.7
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 1.7e-06 57.0 151 34.4


User provided reference genes

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