Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 6.8e-96 354.0 179 100.0
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.1e-81 305.8 179 88.8
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.7e-75 286.2 179 81.0
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 3.9e-75 285.0 179 79.9
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.5e-74 283.1 179 79.3
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.3e-73 280.0 179 78.2
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.8e-73 278.9 169 82.2
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 77.7
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 74.3
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.0e-71 272.7 178 74.7
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 5.8e-71 271.2 178 74.2
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.3e-70 270.0 174 78.2
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 76.5
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.8e-70 268.5 171 78.9
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.9e-70 268.1 174 77.0
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.9e-70 268.1 178 73.6
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 8.4e-70 267.3 182 75.3
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 73.2
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.1e-69 266.9 171 78.4
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 73.2
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 75.4
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.4e-69 265.8 171 77.8
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 76.0
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 76.0
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 77.1
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 3.2e-69 265.4 167 80.2
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 73.7
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 73.7
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 4.2e-69 265.0 175 74.9
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 7.1e-69 264.2 174 76.4
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 72.6
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 9.3e-69 263.8 175 73.7
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 73.2
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.6e-68 263.1 180 73.3
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.1e-68 262.7 174 75.9
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 2.1e-68 262.7 173 78.6
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 2.1e-68 262.7 179 72.6
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 4.6e-68 261.5 170 77.6
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 72.6
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.0e-68 261.2 173 74.6
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 74.3
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 72.1
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 7.9e-68 260.8 171 76.6
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.3e-67 260.0 178 73.6
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 72.1
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.8e-67 259.6 170 77.1
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.8e-67 259.6 180 74.4
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 71.5
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 6.7e-67 257.7 172 74.4
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.7e-67 257.7 172 75.0
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.7e-67 257.7 172 75.0
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 6.7e-67 257.7 172 77.3
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 6.7e-67 257.7 171 76.6
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 8.7e-67 257.3 173 74.0
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.1e-66 256.9 173 72.8
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.1e-66 256.9 172 76.2
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.1e-66 256.9 173 74.6
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.1e-66 256.9 173 74.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 72.1
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.9e-66 256.1 179 73.2
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.5e-66 255.8 179 72.6
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.5e-66 255.8 173 74.6
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.5e-66 255.8 173 74.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.5e-66 255.8 171 74.3
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 3.3e-66 255.4 178 72.5
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 3.3e-66 255.4 172 76.2
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 3.3e-66 255.4 174 73.0
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 72.6
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 5.6e-66 254.6 168 75.6
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 7.4e-66 254.2 168 75.6
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 7.4e-66 254.2 168 75.0
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.6e-66 253.8 173 73.4
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.6e-66 253.8 169 76.9
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.6e-65 253.1 173 72.8
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.1e-65 252.7 179 71.5
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.1e-65 252.7 169 76.9
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 2.8e-65 252.3 169 74.0
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.8e-65 252.3 179 69.8
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 8.1e-65 250.8 170 72.9
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.1e-64 250.4 175 72.0
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.4e-64 250.0 165 77.0
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.8e-64 249.6 173 73.4
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 2.4e-64 249.2 172 72.7
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.4e-64 249.2 170 72.4
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.1e-64 248.8 179 70.4
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 4.0e-64 248.4 165 74.5
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 4.0e-64 248.4 174 71.8
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 5.3e-64 248.1 170 72.9
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.9e-64 247.7 175 72.6
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 6.9e-64 247.7 177 72.9
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 9.0e-64 247.3 177 72.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.2e-63 246.9 177 69.5
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.2e-63 246.9 168 74.4
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.2e-63 246.9 173 71.1
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.2e-63 246.9 189 67.7
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.2e-63 246.9 169 73.4
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.5e-63 246.5 174 71.3
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.5e-63 246.5 169 72.8
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 2.6e-63 245.7 178 73.0
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 3.4e-63 245.4 174 70.1
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 3.4e-63 245.4 207 65.2
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 7.6e-63 244.2 174 69.5
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 7.6e-63 244.2 169 72.8
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.0e-62 243.8 174 70.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.7e-62 243.0 174 70.7
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 2.2e-62 242.7 170 71.2
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 2.9e-62 242.3 170 71.8
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 3.8e-62 241.9 179 67.0
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 6.5e-62 241.1 170 71.2
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 8.4e-62 240.7 167 72.5
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 3.2e-61 238.8 170 69.4
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 3.2e-61 238.8 175 70.9
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 7.1e-61 237.7 169 74.0
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 9.3e-61 237.3 170 68.8
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.2e-60 236.9 169 70.4
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.7e-60 235.7 160 73.8
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 6.0e-60 234.6 150 78.7
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 6.0e-60 234.6 172 70.3
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 5.1e-59 231.5 170 68.8
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.1e-59 231.5 210 61.0
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.1e-58 230.3 161 75.2
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 6.2e-57 224.6 201 61.7
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 9.0e-56 220.7 169 65.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.2e-55 220.3 150 74.0
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.2e-55 220.3 147 73.5
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 3.4e-55 218.8 150 73.3
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 3.9e-51 205.3 169 63.3
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 8.5e-46 187.6 118 82.2
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 6.1e-44 181.4 171 60.2
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 6.7e-43 177.9 162 54.3
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.7e-43 177.9 170 59.4
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 3.3e-42 175.6 165 53.9
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.7e-42 174.9 116 77.6
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.3e-41 173.7 169 50.9
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 1.7e-41 173.3 117 77.8
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 6.3e-41 171.4 162 52.5
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.1e-40 170.6 116 74.1
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 2.4e-40 169.5 165 51.5
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.3e-38 163.7 104 77.9
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.1e-35 151.8 157 55.4
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 2.6e-34 149.4 173 50.3
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 7.4e-34 147.9 161 50.9
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 9.7e-34 147.5 221 41.2
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.1e-32 144.1 163 49.1
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-32 143.7 193 48.7
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.7e-31 137.9 93 72.0
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.5e-29 133.7 86 76.7
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.5e-29 132.9 82 80.5
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.6e-28 130.2 83 77.1
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.6e-26 122.9 98 67.3
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 4.4e-26 122.1 89 66.3
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.3e-25 120.6 139 49.6
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.2e-25 119.8 86 68.6
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 7.0e-24 114.8 114 57.9
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.6e-23 113.6 91 62.6
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.2e-22 109.8 75 72.0
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 8.5e-22 107.8 85 60.0
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 3.4e-18 95.9 138 46.4
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 5.0e-14 82.0 71 56.3
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 7.2e-13 78.2 173 36.4
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 2.0e-10 70.1 152 34.9
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 3.4e-10 69.3 85 48.2
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 4.4e-10 68.9 54 55.6
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.2e-09 66.6 44 59.1
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 3.7e-09 65.9 41 70.7
CDE04G0800 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 6.6e-06 55.1 42 59.5


User provided reference genes

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