Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07688 Striga asiatica HOM05D000063 ORTHO05D400181 8.1e-54 213.4 101 100.0
SGA_v2.0_scaffold144G35973 Striga asiatica HOM05D000063 ORTHO05D005936 2.0e-20 102.4 69 73.9
Potri.003G122400 Populus trichocarpa HOM05D000063 ORTHO05D005936 2.6e-15 85.5 58 60.3
Sabra03G0086300 Salix brachista HOM05D000063 ORTHO05D005936 2.6e-15 85.5 57 61.4
Lalb_Chr16g0389731 Lupinus albus HOM05D000063 ORTHO05D005936 5.7e-15 84.3 57 66.7
Potri.001G109400 Populus trichocarpa HOM05D000063 ORTHO05D005936 9.7e-15 83.6 58 58.6
Lalb_Chr05g0225041 Lupinus albus HOM05D000063 ORTHO05D005936 2.8e-14 82.0 57 63.2
TWI15G0440 Tripterygium wilfordii HOM05D000063 ORTHO05D005936 3.7e-14 81.6 58 56.9
TWI60G0986 Tripterygium wilfordii HOM05D000063 ORTHO05D005936 1.1e-13 80.1 58 56.9
AUR62010646 Chenopodium quinoa HOM05D000063 ORTHO05D005936 1.4e-13 79.7 55 60.0
AUR62017288 Chenopodium quinoa HOM05D000063 ORTHO05D005936 1.4e-13 79.7 55 60.0
MD06G1073500 Malus domestica HOM05D000063 ORTHO05D005936 1.4e-13 79.7 60 55.0
PSO782G5070 Papaver somniferum HOM05D000063 ORTHO05D005936 1.8e-13 79.3 67 52.2
Sed0016200 Sechium edule HOM05D000063 ORTHO05D005936 1.8e-13 79.3 56 64.3
Ah.12g057590 Amaranthus hybridus HOM05D000063 ORTHO05D005936 2.4e-13 79.0 53 60.4
Dinv39005 Davidia involucrata HOM05D000063 ORTHO05D005936 2.4e-13 79.0 56 62.5
Duzib084G1369 Durio zibethinus HOM05D000063 ORTHO05D005936 2.4e-13 79.0 56 64.3
Duzib205G0765 Durio zibethinus HOM05D000063 ORTHO05D005936 2.4e-13 79.0 56 60.7
Glyma.05G049300 Glycine max HOM05D000063 ORTHO05D005936 2.4e-13 79.0 58 62.1
Lj2P193T32 Lonicera japonica HOM05D000063 ORTHO05D005936 2.4e-13 79.0 57 61.4
Ca_20249_v3 Cicer arietinum L. HOM05D000063 ORTHO05D005936 3.1e-13 78.6 58 58.6
Manes.02G027000 Manihot esculenta HOM05D000063 ORTHO05D005936 4.1e-13 78.2 56 55.4
Medtr4g102790 Medicago truncatula HOM05D000063 ORTHO05D005936 4.1e-13 78.2 58 58.6
PSO478G4606 Papaver somniferum HOM05D000063 ORTHO05D005936 4.1e-13 78.2 67 52.2
Sabra01G0082700 Salix brachista HOM05D000063 ORTHO05D005936 4.1e-13 78.2 58 53.4
CANSAT21G1887 Cannabis sativa HOM05D000063 ORTHO05D005936 5.3e-13 77.8 56 58.9
Aa31LG2G570 Aethionema arabicum HOM05D000063 ORTHO05D005936 7.0e-13 77.4 57 57.9
THA.LOC104818192 Tarenaya hassleriana HOM05D000063 ORTHO05D005936 7.0e-13 77.4 57 59.6
Aqoxy7G00430 Aquilegia oxysepala HOM05D000063 ORTHO05D005936 9.1e-13 77.0 67 53.7
Lj4g0026192 Lotus japonicus HOM05D000063 ORTHO05D005936 9.1e-13 77.0 53 60.4
MD04G1066800 Malus domestica HOM05D000063 ORTHO05D005936 9.1e-13 77.0 57 57.9
Manes.01G066400 Manihot esculenta HOM05D000063 ORTHO05D005936 9.1e-13 77.0 56 57.1
COL.COLO4_05265 Corchorus olitorius HOM05D000063 ORTHO05D005936 1.2e-12 76.6 56 58.9
Sp2g01490 Schrenkiella parvula HOM05D000063 ORTHO05D005936 1.2e-12 76.6 57 56.1
AL2G12430 Arabidopsis lyrata HOM05D000063 ORTHO05D005936 1.6e-12 76.3 56 60.7
EL10Ac5g12734 Beta vulgaris HOM05D000063 ORTHO05D005936 1.6e-12 76.3 58 51.7
Glyma.17G131200 Glycine max HOM05D000063 ORTHO05D005936 1.6e-12 76.3 58 58.6
Gohir.A12G225300 Gossypium hirsutum HOM05D000063 ORTHO05D005936 1.6e-12 76.3 56 60.7
Gohir.D12G227900 Gossypium hirsutum HOM05D000063 ORTHO05D005936 1.6e-12 76.3 56 60.7
Gorai.008G243900 Gossypium raimondii HOM05D000063 ORTHO05D005936 1.6e-12 76.3 56 60.7
Psat4g067000 Pisum sativum HOM05D000063 ORTHO05D005936 1.6e-12 76.3 58 56.9
QL12p017405 Quercus lobata HOM05D000063 ORTHO05D005936 1.6e-12 76.3 57 56.1
Solyc08g080400.2 Solanum lycopersicum HOM05D000063 ORTHO05D005936 2.0e-12 75.9 57 56.1
CiPaw.12G097700 Carya illinoinensis HOM05D000063 ORTHO05D005936 2.6e-12 75.5 56 57.1
ClCG00G000900 Citrullus lanatus HOM05D000063 ORTHO05D005936 2.6e-12 75.5 56 58.9
ClCG00G001150 Citrullus lanatus HOM05D000063 ORTHO05D005936 2.6e-12 75.5 56 58.9
ClCG10G003760 Citrullus lanatus HOM05D000063 ORTHO05D005936 2.6e-12 75.5 56 58.9
Thecc.03G272000 Theobroma cacao HOM05D000063 ORTHO05D005936 2.6e-12 75.5 56 57.1
AT1G63100 Arabidopsis thaliana HOM05D000063 ORTHO05D005936 3.5e-12 75.1 56 58.9
Carub.0002s0188 Capsella rubella HOM05D000063 ORTHO05D005936 3.5e-12 75.1 56 58.9
CsaV3_3G003740 Cucumis sativus L. HOM05D000063 ORTHO05D005936 3.5e-12 75.1 56 58.9
MELO3C014056.2 Cucumis melo HOM05D000063 ORTHO05D005936 4.5e-12 74.7 56 57.1
HanXRQChr07g0188561 Helianthus annuus HOM05D000063 ORTHO05D005936 4.5e-12 74.7 67 53.7
MSTRG.13822 Avicennia marina HOM05D000063 ORTHO05D005936 5.9e-12 74.3 57 56.1
CARHR048410 Cardamine hirsuta HOM05D000063 ORTHO05D005936 5.9e-12 74.3 56 57.1
Cfa012109 Carpinus fangiana HOM05D000063 ORTHO05D005936 5.9e-12 74.3 56 53.6
Haze_08942 Corylus avellana HOM05D000063 ORTHO05D005936 5.9e-12 74.3 56 55.4
Peaxi162Scf00714g00058 Petunia axillaris HOM05D000063 ORTHO05D005936 5.9e-12 74.3 67 50.7
SalBow1G3433 Salvia bowleyana HOM05D000063 ORTHO05D005936 5.9e-12 74.3 57 59.6
Sc22g0000250 Simmondsia chinensis HOM05D000063 ORTHO05D005936 5.9e-12 74.3 56 57.1
DCAR_008421 Daucus carota HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 54.4
FvH4_5g01550 Fragaria vesca HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 56.1
FAN04G1072 Fragaria x ananassa HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 56.1
FAN08G1557 Fragaria x ananassa HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 56.1
FAN08G2624 Fragaria x ananassa HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 56.1
FAN13G0723 Fragaria x ananassa HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 56.1
FAN18G3999 Fragaria x ananassa HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 56.1
Nitab4.5_0002234g0050 Nicotiana tabacum HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 54.4
Nitab4.5_0002853g0080 Nicotiana tabacum HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 54.4
Phvul.003G212200 Phaseolus vulgaris HOM05D000063 ORTHO05D005936 7.7e-12 73.9 53 58.5
PGSC0003DMG400003047 Solanum tuberosum HOM05D000063 ORTHO05D005936 7.7e-12 73.9 57 54.4
Cc08_g14050 Coffea canephora HOM05D000063 ORTHO05D005936 1.0e-11 73.6 56 53.6
Sopen08g028730 Solanum pennellii HOM05D000063 ORTHO05D005936 1.0e-11 73.6 57 54.4
Migut.E01292 Erythranthe guttata HOM05D000063 ORTHO05D005936 1.7e-11 72.8 55 60.0
RcHm_v2.0_Chr7g0199131 Rosa chinensis HOM05D000063 ORTHO05D005936 1.7e-11 72.8 57 57.9
TAR375G0463 Trochodendron aralioides HOM05D000063 ORTHO05D005936 1.7e-11 72.8 67 50.7
TAR375G0693 Trochodendron aralioides HOM05D000063 ORTHO05D005936 1.7e-11 72.8 67 50.7
Cpa.g.sc74.80 Carica papaya HOM05D000063 ORTHO05D005936 2.2e-11 72.4 51 58.8
DCAR_000591 Daucus carota HOM05D000063 ORTHO05D005936 2.2e-11 72.4 53 56.6
Duzib068G1247 Durio zibethinus HOM05D000063 ORTHO05D005936 2.2e-11 72.4 54 57.4
Oeu048782.1 Olea europaea HOM05D000063 ORTHO05D005936 2.2e-11 72.4 57 56.1
TAR629G3205 Trochodendron aralioides HOM05D000063 ORTHO05D005936 2.2e-11 72.4 56 53.6
CSS0014984 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D005936 2.9e-11 72.0 56 53.6
ECA233G2724 Erigeron canadensis HOM05D000063 ORTHO05D005936 2.9e-11 72.0 67 47.8
Thhalv10023324m.g Eutrema salsugineum HOM05D000063 ORTHO05D005936 2.9e-11 72.0 56 53.6
Lsat_1_v5_gn_6_7120 Lactuca sativa HOM05D000063 ORTHO05D005936 2.9e-11 72.0 67 50.7
Lsat_1_v5_gn_6_7140 Lactuca sativa HOM05D000063 ORTHO05D005936 2.9e-11 72.0 67 50.7
Oeu059064.1 Olea europaea HOM05D000063 ORTHO05D005936 2.9e-11 72.0 54 57.4
Prupe.5G091700 Prunus persica HOM05D000063 ORTHO05D005936 2.9e-11 72.0 57 52.6
Actinidia05226 Actinidia chinensis HOM05D000063 ORTHO05D005936 3.8e-11 71.6 65 53.8
CSS0017515 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D005936 3.8e-11 71.6 53 58.5
CSS0037908 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D005936 3.8e-11 71.6 53 58.5
MBI12_g29749_MAGBIO Magnolia biondii HOM05D000063 ORTHO05D005936 3.8e-11 71.6 56 51.8
PGR031G3024 Punica granatum HOM05D000063 ORTHO05D005936 3.8e-11 71.6 57 57.9
THA.LOC104809421 Tarenaya hassleriana HOM05D000063 ORTHO05D005936 3.8e-11 71.6 57 56.1
CAN.G981.25 Capsicum annuum HOM05D000063 ORTHO05D005936 5.0e-11 71.2 57 52.6
Ciclev10019186m.g Citrus clementina HOM05D000063 ORTHO05D005936 5.0e-11 71.2 56 55.4
Eucgr.D01917 Eucalyptus grandis HOM05D000063 ORTHO05D005936 5.0e-11 71.2 57 54.4
Nn6g34233 Nelumbo nucifera HOM05D000063 ORTHO05D005936 5.0e-11 71.2 65 52.3
HPP92_008387 Vanilla planifolia HOM05D000063 ORTHO05D005936 5.0e-11 71.2 57 54.4
A09p13450 Brassica napus HOM05D000063 ORTHO05D005936 6.5e-11 70.9 52 61.5
BcaC04g22720 Brassica carinata HOM05D000063 ORTHO05D005936 8.5e-11 70.5 49 63.3
C09p15940 Brassica napus HOM05D000063 ORTHO05D005936 8.5e-11 70.5 49 63.3
BolC9t54505H Brassica oleracea HOM05D000063 ORTHO05D005936 8.5e-11 70.5 49 63.3
CiPaw.11G140700 Carya illinoinensis HOM05D000063 ORTHO05D005936 8.5e-11 70.5 56 53.6
Dinv37685 Davidia involucrata HOM05D000063 ORTHO05D005936 8.5e-11 70.5 54 59.3
Atru.chr9.1546 Acer truncatum HOM05D000063 ORTHO05D005936 1.9e-10 69.3 56 50.0
DCAR_008419 Daucus carota HOM05D000063 ORTHO05D005936 1.9e-10 69.3 57 52.6
Rhsim07G0094200 Rhododendron simsii HOM05D000063 ORTHO05D005936 2.5e-10 68.9 54 51.9
HPP92_004953 Vanilla planifolia HOM05D000063 ORTHO05D005936 2.5e-10 68.9 57 49.1
Actinidia02038 Actinidia chinensis HOM05D000063 ORTHO05D005936 3.2e-10 68.6 57 54.4
BcaC06g31935 Brassica carinata HOM05D000063 ORTHO05D005936 4.2e-10 68.2 50 62.0
Gohir.A03G016330 Gossypium hirsutum HOM05D000063 ORTHO05D005936 4.2e-10 68.2 56 53.6
Gorai.003G162400 Gossypium raimondii HOM05D000063 ORTHO05D005936 4.2e-10 68.2 56 53.6
Sed0000571 Sechium edule HOM05D000063 ORTHO05D005936 4.2e-10 68.2 56 53.6
A09p15690 Brassica napus HOM05D000063 ORTHO05D005936 5.5e-10 67.8 50 62.0
BraA09t36992Z Brassica rapa HOM05D000063 ORTHO05D005936 5.5e-10 67.8 52 59.6
BraA09t37210Z Brassica rapa HOM05D000063 ORTHO05D005936 5.5e-10 67.8 50 62.0
Hma1.2p1_0514F.1_g170050 Hydrangea macrophylla HOM05D000063 ORTHO05D005936 5.5e-10 67.8 54 53.7
BcaC04g22471 Brassica carinata HOM05D000063 ORTHO05D005936 7.2e-10 67.4 50 62.0
C09p18920 Brassica napus HOM05D000063 ORTHO05D005936 7.2e-10 67.4 50 62.0
BolC9t54794H Brassica oleracea HOM05D000063 ORTHO05D005936 7.2e-10 67.4 50 62.0
ATR0757G053 Amborella trichopoda HOM05D000063 ORTHO05D005936 9.4e-10 67.0 54 53.7
Gohir.D03G154300 Gossypium hirsutum HOM05D000063 ORTHO05D005936 9.4e-10 67.0 56 53.6
SEGI_05998 Sequoiadendron giganteum HOM05D000063 ORTHO05D005936 9.4e-10 67.0 56 50.0
MSTRG.1891 Avicennia marina HOM05D000063 ORTHO05D005936 1.2e-09 66.6 57 50.9
BcaB07g31382 Brassica carinata HOM05D000063 ORTHO05D005936 3.6e-09 65.1 50 60.0
unitig_52.g17509 Utricularia gibba HOM05D000063 ORTHO05D005936 3.6e-09 65.1 51 52.9
Peaxi162Scf01324g00011 Petunia axillaris HOM05D000063 ORTHO05D005936 8.0e-09 63.9 57 47.4
CDE02G1420 Ceratophyllum demersum HOM05D000063 ORTHO05D005936 1.8e-08 62.8 55 47.3
unitig_62.g23546 Utricularia gibba HOM05D000063 ORTHO05D005936 2.3e-08 62.4 51 51.0
AagrBONN_evm.TU.Sc2ySwM_228.291 Anthoceros agrestis HOM05D000063 ORTHO05D005936 4.0e-08 61.6 57 50.9
Hma1.2p1_0371F.1_g138110 Hydrangea macrophylla HOM05D000063 ORTHO05D005936 1.1e-07 60.1 50 52.0
TAR622G0460 Trochodendron aralioides HOM05D000063 ORTHO05D008977 1.1e-07 60.1 95 32.6
Os11g0141700 Oryza sativa ssp. japonica HOM05D000063 ORTHO05D030309 1.5e-07 59.7 67 37.3
Aqoxy5G03248 Aquilegia oxysepala HOM05D000063 ORTHO05D008977 2.0e-07 59.3 95 30.5
Pp3c1_15560 Physcomitrium patens HOM05D000063 ORTHO05D005936 2.0e-07 59.3 56 44.6
Cc07_g01010 Coffea canephora HOM05D000063 ORTHO05D008977 3.3e-07 58.5 90 31.1
Mapoly0014s0183 Marchantia polymorpha HOM05D000063 ORTHO05D005936 5.7e-07 57.8 58 43.1
Os01g0948200 Oryza sativa ssp. japonica HOM05D000063 ORTHO05D003101 5.7e-07 57.8 55 45.5
Os12g0138200 Oryza sativa ssp. japonica HOM05D000063 ORTHO05D030309 5.7e-07 57.8 51 45.1
Ca_19956_v3 Cicer arietinum L. HOM05D000063 ORTHO05D008977 9.7e-07 57.0 90 32.2
Solyc02g094340.1 Solanum lycopersicum HOM05D000063 ORTHO05D008977 9.7e-07 57.0 90 30.0
Sopen02g038990 Solanum pennellii HOM05D000063 ORTHO05D008977 9.7e-07 57.0 90 30.0
arahy.Tifrunner.gnm1.ann1.8PQZ09 Arachis hypogaea HOM05D000063 ORTHO05D008977 1.3e-06 56.6 90 32.2
arahy.Tifrunner.gnm1.ann1.SRU6K5 Arachis hypogaea HOM05D000063 ORTHO05D008977 1.3e-06 56.6 90 32.2
Manes.11G083500 Manihot esculenta HOM05D000063 ORTHO05D008977 1.3e-06 56.6 90 31.1
COL.COLO4_13300 Corchorus olitorius HOM05D000063 ORTHO05D008977 1.7e-06 56.2 90 31.1
Migut.F00040 Erythranthe guttata HOM05D000063 ORTHO05D008977 1.7e-06 56.2 90 31.1
Gohir.A09G037800 Gossypium hirsutum HOM05D000063 ORTHO05D008977 1.7e-06 56.2 90 31.1
Lj1g0015499 Lotus japonicus HOM05D000063 ORTHO05D008977 1.7e-06 56.2 90 31.1
CSS0012789 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008977 2.2e-06 55.8 91 31.9
MELO3C008170.2 Cucumis melo HOM05D000063 ORTHO05D008977 2.2e-06 55.8 90 31.1
CsaV3_2G033970 Cucumis sativus L. HOM05D000063 ORTHO05D008977 2.2e-06 55.8 90 31.1
FAN05G1945 Fragaria x ananassa HOM05D000063 ORTHO05D008977 2.2e-06 55.8 90 30.0
SGA_v2.0_scaffold199G41248 Striga asiatica HOM05D000227 ORTHO05D001491 2.2e-06 55.8 33 72.7
EL10Ac4g10176 Beta vulgaris HOM05D000063 ORTHO05D003101 2.8e-06 55.5 60 41.7
FvH4_6g53920 Fragaria vesca HOM05D000063 ORTHO05D008977 2.8e-06 55.5 90 30.0
FAN02G4617 Fragaria x ananassa HOM05D000063 ORTHO05D008977 2.8e-06 55.5 90 30.0
FAN14G2429 Fragaria x ananassa HOM05D000063 ORTHO05D008977 2.8e-06 55.5 90 30.0
Oeu035257.1 Olea europaea HOM05D000063 ORTHO05D008977 2.8e-06 55.5 90 30.0
Os06g0127800 Oryza sativa ssp. japonica HOM05D000063 ORTHO05D005936 2.8e-06 55.5 61 50.8
Phvul.001G089900 Phaseolus vulgaris HOM05D000063 ORTHO05D008977 2.8e-06 55.5 90 32.2
RcHm_v2.0_Chr2g0176081 Rosa chinensis HOM05D000063 ORTHO05D008977 2.8e-06 55.5 90 30.0
Zm00001eb141310 Zea mays HOM05D000063 ORTHO05D003101 2.8e-06 55.5 55 43.6
AagrBONN_evm.TU.Sc2ySwM_362.1802 Anthoceros agrestis HOM05D000063 ORTHO05D008977 4.8e-06 54.7 62 41.9
Aqoxy2G00294 Aquilegia oxysepala HOM05D000063 ORTHO05D003101 4.8e-06 54.7 64 40.6
Oeu035253.1 Olea europaea HOM05D000063 ORTHO05D008977 4.8e-06 54.7 90 30.0
Pp3c2_21080 Physcomitrium patens HOM05D000063 ORTHO05D005936 4.8e-06 54.7 56 42.9
ClCG11G007600 Citrullus lanatus HOM05D000063 ORTHO05D008977 6.3e-06 54.3 56 42.9
AUR62039840 Chenopodium quinoa HOM05D000063 ORTHO05D003101 8.2e-06 53.9 60 40.0
Pp3c1_15680 Physcomitrium patens HOM05D000063 ORTHO05D008977 8.2e-06 53.9 64 39.1


User provided reference genes

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