Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 3.3e-124 448.4 224 100.0
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.4e-122 442.2 224 98.2
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.7e-107 392.9 224 84.8
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.2e-102 376.7 224 83.0
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.1e-98 363.6 224 76.8
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.1e-98 363.6 224 76.8
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 7.0e-98 360.9 224 76.3
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 7.0e-98 360.9 224 76.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 2.0e-97 359.4 224 75.9
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.7e-97 359.0 209 83.7
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 4.5e-97 358.2 207 83.1
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.2e-96 355.9 222 77.5
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 6.5e-96 354.4 224 75.0
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.1e-95 353.6 223 75.8
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.1e-95 353.6 222 77.0
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.2e-95 352.1 223 75.3
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 9.4e-95 350.5 222 75.7
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.6e-94 349.7 223 77.6
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.6e-94 348.6 223 74.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.0e-93 347.1 222 75.7
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.0e-93 345.5 224 75.0
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 5.2e-93 344.7 224 75.0
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 2.6e-92 342.4 237 71.3
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 3.4e-92 342.0 215 77.7
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.4e-92 342.0 223 74.4
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 4.4e-92 341.7 219 76.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 5.7e-92 341.3 218 74.3
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.3e-91 340.1 225 72.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 2.2e-91 339.3 226 72.6
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.2e-91 339.3 225 72.4
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.2e-91 339.3 220 72.3
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.2e-91 339.3 220 72.7
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.2e-91 339.3 218 74.3
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.8e-91 339.0 222 70.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 6.3e-91 337.8 219 72.1
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 8.3e-91 337.4 219 71.7
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.4e-90 336.7 224 71.9
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.8e-90 336.3 221 70.6
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.8e-90 336.3 204 78.4
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.4e-90 335.9 222 74.3
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 4.1e-90 335.1 219 72.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 5.4e-90 334.7 219 74.4
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.4e-90 334.7 224 71.0
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.6e-89 333.2 221 70.6
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 2.0e-89 332.8 221 70.6
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 2.7e-89 332.4 221 71.0
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.5e-89 332.0 221 71.0
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 5.9e-89 331.3 221 71.0
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.9e-89 331.3 221 71.0
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 5.9e-89 331.3 219 71.2
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 5.9e-89 331.3 220 71.8
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 7.7e-89 330.9 221 70.1
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 7.7e-89 330.9 221 71.5
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 7.7e-89 330.9 227 70.0
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.0e-88 330.5 221 70.6
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.0e-88 330.5 220 70.5
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.7e-88 329.7 221 70.1
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.3e-88 329.3 217 72.4
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 2.9e-88 328.9 221 70.1
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.9e-88 328.9 227 70.0
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 2.9e-88 328.9 223 70.9
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 3.8e-88 328.6 221 69.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 5.0e-88 328.2 227 70.0
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 6.6e-88 327.8 221 70.1
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 6.6e-88 327.8 226 70.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 8.6e-88 327.4 223 70.4
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 8.6e-88 327.4 225 69.8
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.6e-88 327.4 226 70.8
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 8.6e-88 327.4 223 70.0
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.5e-87 326.6 221 69.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.9e-87 326.2 222 70.7
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.9e-87 326.2 222 70.7
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.9e-87 326.2 223 69.5
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 2.5e-87 325.9 226 70.4
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 3.3e-87 325.5 212 73.6
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 3.3e-87 325.5 220 69.5
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 3.3e-87 325.5 180 91.7
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 5.6e-87 324.7 225 68.9
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 9.5e-87 323.9 220 69.1
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 9.5e-87 323.9 225 69.3
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 9.5e-87 323.9 223 70.0
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-86 323.6 226 70.4
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.8e-86 322.4 220 70.5
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.8e-86 322.4 217 71.9
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.8e-86 322.4 202 77.2
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 3.6e-86 322.0 217 70.0
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 4.7e-86 321.6 218 70.6
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 4.7e-86 321.6 202 76.2
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 6.1e-86 321.2 220 69.1
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.0e-85 320.5 225 68.0
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.4e-85 320.1 225 68.4
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.8e-85 319.7 206 74.3
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.8e-85 319.7 224 68.3
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.3e-85 319.3 220 68.2
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.3e-85 319.3 218 70.6
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 5.2e-85 318.2 217 69.1
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 5.2e-85 318.2 219 71.2
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 6.8e-85 317.8 225 67.1
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 2.6e-84 315.8 219 70.3
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 3.4e-84 315.5 224 67.4
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.4e-84 315.1 222 67.1
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 4.4e-84 315.1 224 67.0
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.7e-83 313.2 222 67.1
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.7e-83 313.2 225 66.7
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.9e-83 312.4 217 67.7
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-82 310.1 199 73.9
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 5.4e-82 308.1 218 67.9
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.4e-82 308.1 223 66.4
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 9.2e-82 307.4 211 70.1
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-81 307.0 205 71.2
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 7.8e-81 304.3 201 71.6
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-79 299.7 208 69.7
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.9e-79 299.7 208 69.7
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.6e-78 296.6 202 68.8
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 3.6e-78 295.4 186 78.0
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 4.7e-78 295.0 240 62.1
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 8.0e-78 294.3 194 76.3
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-77 293.5 226 64.2
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-77 293.1 201 71.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.1e-77 292.4 224 67.4
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.0e-77 292.0 226 64.2
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 6.8e-77 291.2 205 68.3
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.4e-76 288.9 210 65.7
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 5.8e-76 288.1 222 63.1
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 7.5e-76 287.7 199 68.8
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 2.2e-75 286.2 228 61.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 2.9e-75 285.8 224 61.6
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 8.3e-75 284.3 223 65.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 1.4e-74 283.5 214 62.1
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.9e-74 283.1 232 62.5
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.2e-74 282.3 262 56.9
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.0e-72 277.3 239 58.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 6.6e-72 274.6 224 60.3
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 8.6e-72 274.2 208 63.5
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 7.3e-71 271.2 223 62.3
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.6e-70 268.9 223 61.4
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 8.3e-67 257.7 173 71.1
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.1e-66 257.3 222 59.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 5.4e-66 255.0 211 61.1
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.1e-65 253.1 159 77.4
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.0e-64 249.2 187 67.9
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 4.7e-62 241.9 204 59.8
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-61 240.4 157 72.6
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 6.8e-61 238.0 211 58.8
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 6.8e-61 238.0 224 54.5
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.4e-60 235.7 218 57.3
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.4e-60 235.3 223 57.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 9.9e-60 234.2 222 55.9
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 4.9e-59 231.9 214 55.1
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.4e-59 231.5 220 55.9
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 8.4e-59 231.1 201 58.2
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.9e-55 219.9 211 56.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.1e-54 216.5 171 68.4
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 5.2e-53 211.8 149 68.5
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.7e-48 194.5 157 61.1
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.9e-43 179.5 236 45.3
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.4e-43 178.3 202 54.5
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 9.6e-39 164.5 113 70.8
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.4e-37 160.6 235 41.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.3e-35 154.1 102 68.6
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.4e-34 149.8 215 40.9
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.1e-33 146.7 109 61.5
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.7e-33 146.4 96 75.0
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.0e-32 142.9 230 39.6
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 6.9e-29 131.7 117 59.8
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.0e-27 127.9 160 40.0
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.2e-26 122.9 114 57.0
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.6e-25 120.6 78 74.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 3.2e-18 96.3 203 31.0
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 7.2e-18 95.1 79 59.5
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 2.5e-15 86.7 83 56.6
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.3e-11 74.3 70 50.0
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.2e-11 73.6 105 42.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.3e-06 57.8 40 65.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 1.7e-06 57.4 70 42.9


User provided reference genes

Program Settings