Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 7.3e-144 513.8 255 100.0
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 6.5e-124 447.6 225 98.2
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.8e-110 402.9 254 78.7
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 3.7e-103 378.6 254 73.2
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.5e-101 372.1 254 72.4
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.8e-100 368.6 254 70.9
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.7e-98 362.5 254 70.1
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 3.3e-96 355.5 250 69.6
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 3.7e-95 352.1 246 71.1
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 6.3e-95 351.3 259 69.1
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 8.2e-95 350.9 253 68.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 2.4e-94 349.4 253 67.2
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 3.1e-94 349.0 247 68.8
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.1e-94 349.0 257 68.1
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 3.1e-94 349.0 257 69.6
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 7.0e-94 347.8 247 70.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 9.1e-94 347.4 255 67.8
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.2e-93 347.1 255 67.8
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.0e-93 346.3 245 67.8
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.0e-93 346.3 257 68.9
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.6e-93 345.9 250 69.2
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 7.7e-93 344.4 251 68.1
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.0e-92 344.0 246 69.1
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.9e-92 342.4 254 66.9
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 6.5e-92 341.3 245 66.5
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.5e-91 340.1 244 68.9
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.5e-91 339.3 255 67.8
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 2.5e-91 339.3 241 70.1
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.5e-91 338.2 255 67.5
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 5.5e-91 338.2 254 63.8
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 232 72.8
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.6e-90 336.7 218 72.9
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 2.1e-90 336.3 218 73.9
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 2.7e-90 335.9 210 74.8
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.7e-90 335.9 210 74.8
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.7e-90 335.9 210 74.8
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.7e-90 335.9 258 67.4
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 3.6e-90 335.5 244 65.6
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.7e-90 335.1 254 65.4
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 8.0e-90 334.3 266 63.9
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.4e-89 333.6 234 69.2
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.4e-89 333.6 196 77.6
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.8e-89 333.2 254 65.7
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.3e-89 332.8 199 76.9
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 3.0e-89 332.4 257 64.6
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 6.8e-89 331.3 234 67.9
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 8.8e-89 330.9 257 64.2
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 8.8e-89 330.9 225 72.0
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.2e-88 330.5 254 65.7
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.2e-88 330.5 196 77.6
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.5e-88 330.1 248 63.7
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.0e-88 329.7 232 69.8
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 2.0e-88 329.7 248 66.5
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.0e-88 329.7 248 66.5
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.0e-88 329.7 232 69.8
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.0e-88 329.7 232 69.8
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 2.6e-88 329.3 242 66.1
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.6e-88 329.3 254 64.6
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.6e-88 329.3 246 66.3
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.4e-88 328.9 248 63.3
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 3.4e-88 328.9 196 76.0
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 4.4e-88 328.6 199 76.4
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 5.7e-88 328.2 220 71.4
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.7e-88 328.2 248 66.1
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 7.5e-88 327.8 257 64.2
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 9.7e-88 327.4 250 64.0
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.7e-87 326.6 245 64.5
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.7e-87 326.6 249 63.9
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 2.8e-87 325.9 226 68.1
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 3.7e-87 325.5 254 64.6
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 3.7e-87 325.5 262 63.4
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 4.8e-87 325.1 241 64.3
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.8e-87 325.1 249 63.1
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 6.3e-87 324.7 248 62.9
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.4e-86 323.6 243 65.8
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 3.1e-86 322.4 255 62.4
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 9.1e-86 320.9 260 63.5
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.2e-85 320.5 200 73.5
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.6e-85 320.1 241 64.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 2.0e-85 319.7 252 61.9
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 2.0e-85 319.7 186 80.1
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 2.0e-85 319.7 254 63.0
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 2.7e-85 319.3 246 64.2
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 4.5e-85 318.5 241 64.3
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 4.5e-85 318.5 241 64.3
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 7.7e-85 317.8 248 62.1
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 7.7e-85 317.8 248 62.1
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.0e-84 317.4 196 74.5
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.0e-84 317.4 219 68.9
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.7e-84 316.6 200 73.5
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 2.2e-84 316.2 255 61.6
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 3.8e-84 315.5 196 73.0
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 5.0e-84 315.1 234 64.5
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 8.5e-84 314.3 244 62.7
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.5e-83 313.5 234 64.1
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.2e-83 312.0 200 72.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-82 310.5 257 60.7
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.7e-82 308.5 203 70.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 4.7e-82 308.5 185 76.8
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.0e-81 307.4 203 70.9
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.3e-79 300.4 256 57.0
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.1e-78 297.4 353 47.6
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.8e-78 296.6 172 80.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 7.7e-77 291.2 232 65.5
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 3.3e-75 285.8 252 60.7
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 4.2e-75 285.4 233 60.5
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.3e-68 263.1 148 82.4
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 5.0e-68 261.9 315 48.9
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.2e-66 257.3 223 59.2
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.6e-64 249.6 136 85.3
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.9e-62 243.4 245 55.5
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.8e-57 226.9 215 53.0
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.0e-57 225.7 146 71.2
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.2e-56 224.2 254 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.7e-55 220.3 181 55.2
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 2.9e-55 219.5 193 52.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.5e-51 207.2 186 51.6
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 4.3e-51 205.7 119 82.4
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.3e-47 194.1 181 49.7
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.4e-46 189.9 154 59.1
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 7.1e-46 188.3 106 84.9
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-43 179.9 169 53.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 7.3e-43 178.3 219 45.2
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.4e-41 173.3 100 82.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-40 170.6 100 81.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.5e-40 170.6 100 79.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.5e-40 170.6 97 85.6
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.1e-38 164.5 153 56.9
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 4.2e-38 162.5 137 54.7
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 6.2e-34 148.7 87 81.6
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 4.4e-32 142.5 155 51.6
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.9e-31 139.8 95 68.4
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 5.1e-28 129.0 101 59.4
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.5e-27 127.5 183 42.6
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.1e-26 123.6 184 37.5
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 9.9e-24 114.8 69 75.4
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.2e-23 113.6 89 61.8
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.2e-23 113.6 89 61.8
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.9e-23 113.2 72 72.2
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.9e-23 113.2 72 72.2
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.1e-22 111.3 71 71.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.4e-22 110.2 102 58.8
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 7.9e-21 105.1 88 53.4
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 4.5e-16 89.4 177 29.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.3e-15 87.8 82 50.0
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 2.1e-13 80.5 117 30.8
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 2.3e-12 77.0 49 71.4
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 3.0e-12 76.6 108 43.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.9e-12 76.3 44 77.3
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.9e-12 76.3 44 77.3
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 2.8e-10 70.1 40 82.5
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 4.8e-10 69.3 106 38.7
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 3.1e-09 66.6 40 77.5
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.3e-09 65.9 40 72.5
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.2e-08 64.7 55 56.4
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.2e-08 64.7 56 55.4
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.6e-08 63.5 47 61.7
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 3.4e-08 63.2 82 39.0
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.4e-08 63.2 42 66.7
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.0e-07 59.3 72 43.1


User provided reference genes

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