Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 7.3e-124 447.2 219 100.0
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.7e-48 196.8 107 83.2
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 1.7e-48 196.8 106 90.6
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 5.0e-48 195.3 106 90.6
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 5.0e-48 195.3 106 90.6
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.4e-47 193.7 108 85.2
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.4e-47 193.7 108 85.2
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.9e-47 193.4 108 85.2
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 3.2e-47 192.6 107 86.0
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.5e-47 191.8 107 86.0
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 3.6e-46 189.1 107 86.0
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.4e-45 187.2 107 83.2
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.8e-45 186.8 107 86.0
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.3e-45 186.4 107 85.0
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 3.0e-45 186.0 106 84.9
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 6.7e-45 184.9 107 83.2
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 8.8e-45 184.5 106 84.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.1e-44 184.1 107 82.2
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.1e-44 184.1 107 84.1
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.0e-44 183.3 118 74.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.0e-44 183.3 107 84.1
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.0e-44 183.3 107 84.1
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.0e-44 183.3 107 81.3
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.6e-44 183.0 176 57.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.6e-44 183.0 107 83.2
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.6e-44 183.0 107 84.1
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.6e-44 183.0 107 84.1
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.3e-44 182.6 107 79.4
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 4.4e-44 182.2 119 74.8
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.4e-44 182.2 129 72.1
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.4e-44 182.2 107 81.3
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.4e-44 182.2 107 83.2
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.7e-44 181.8 107 81.3
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 5.7e-44 181.8 107 81.3
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 5.7e-44 181.8 107 81.3
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.7e-44 181.8 107 81.3
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.7e-44 181.8 107 82.2
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.7e-44 181.8 106 84.9
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.7e-44 181.8 107 81.3
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 7.4e-44 181.4 107 83.2
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 7.4e-44 181.4 107 83.2
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 9.7e-44 181.0 106 84.0
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 9.7e-44 181.0 107 79.4
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.7e-43 180.3 107 81.3
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.2e-43 179.9 107 81.3
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.2e-43 179.9 107 81.3
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.2e-43 179.9 106 83.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 2.8e-43 179.5 142 64.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.8e-43 179.5 106 83.0
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 6.3e-43 178.3 107 80.4
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 6.3e-43 178.3 107 79.4
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 6.3e-43 178.3 123 71.5
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 8.2e-43 177.9 106 83.0
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.2e-43 177.9 107 79.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.4e-42 177.2 107 80.4
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.4e-42 177.2 107 80.4
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.4e-42 177.2 106 82.1
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.4e-42 177.2 107 79.4
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 2.4e-42 176.4 106 81.1
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 2.4e-42 176.4 107 77.6
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.1e-42 176.0 106 80.2
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 3.1e-42 176.0 106 80.2
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.1e-42 176.0 107 79.4
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 3.1e-42 176.0 106 80.2
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 5.3e-42 175.3 106 80.2
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 6.9e-42 174.9 108 77.8
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 9.1e-42 174.5 106 80.2
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 9.1e-42 174.5 107 80.4
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 9.1e-42 174.5 107 80.4
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.0e-41 173.3 106 78.3
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.4e-39 167.2 141 63.1
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 2.5e-39 166.4 107 71.0
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 5.5e-39 165.2 107 70.1
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 7.2e-39 164.9 107 69.2
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.1e-38 163.3 106 78.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.8e-37 160.2 106 75.5
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.8e-37 160.2 106 75.5
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 5.2e-37 158.7 106 73.6
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.1e-36 157.5 138 59.4
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.3e-35 154.1 107 70.1
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.9e-32 142.9 75 90.7
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.9e-31 140.2 96 72.9
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 3.2e-31 139.4 75 86.7
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.2e-31 139.4 75 88.0
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 5.5e-31 138.7 75 88.0
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 7.2e-31 138.3 80 82.5
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 9.4e-31 137.9 75 84.0
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 9.4e-31 137.9 75 85.3
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 9.4e-31 137.9 75 85.3
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.7e-30 135.6 114 60.5
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 6.1e-30 135.2 80 82.5
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 6.1e-30 135.2 70 91.4
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 8.0e-30 134.8 89 73.0
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 8.0e-30 134.8 89 73.0
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.8e-29 133.7 92 75.0
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.3e-29 133.3 81 75.3
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 4.0e-29 132.5 75 81.3
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 4.0e-29 132.5 75 81.3
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 5.2e-29 132.1 75 84.0
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 5.2e-29 132.1 75 82.7
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 6.7e-29 131.7 75 82.7
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 8.8e-29 131.3 75 81.3
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 8.8e-29 131.3 75 81.3
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 8.8e-29 131.3 83 77.1
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.2e-28 131.0 75 84.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.5e-28 130.6 75 84.0
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.5e-28 130.6 80 75.0
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 2.0e-28 130.2 75 84.0
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 3.3e-28 129.4 75 80.0
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 3.3e-28 129.4 84 76.2
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 4.4e-28 129.0 72 81.9
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 5.7e-28 128.6 75 82.7
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 7.5e-28 128.3 75 81.3
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 7.5e-28 128.3 116 62.1
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 9.7e-28 127.9 80 78.8
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 9.7e-28 127.9 80 78.8
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 9.7e-28 127.9 80 78.8
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 9.7e-28 127.9 75 82.7
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.3e-27 127.5 73 79.5
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.7e-27 127.1 139 51.8
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.2e-27 126.7 80 78.8
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 2.2e-27 126.7 75 81.3
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.8e-27 126.3 75 80.0
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.8e-27 126.3 75 80.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 4.8e-27 125.6 75 78.7
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 4.8e-27 125.6 75 78.7
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.8e-27 125.6 75 78.7
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-26 124.4 75 77.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.8e-26 123.6 75 76.0
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.0e-25 120.2 107 57.9
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 4.5e-25 119.0 125 45.6
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.1e-22 110.2 71 74.6
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 3.0e-21 106.3 99 48.5
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 4.0e-21 105.9 77 61.0
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.2e-20 104.4 70 60.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 8.3e-19 98.2 105 44.8
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 5.4e-18 95.5 57 77.2
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 7.0e-18 95.1 56 78.6
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 1.3e-16 90.9 53 81.1
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 8.5e-16 88.2 51 82.4
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 1.9e-15 87.0 61 68.9
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 5.5e-15 85.5 52 75.0
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 9.5e-15 84.7 51 80.4
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-11 73.9 47 68.1
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 7.0e-10 68.6 60 55.0
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.6e-09 67.4 32 96.9
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 7.8e-09 65.1 32 87.5
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 7.3e-07 58.5 28 92.9
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 2.8e-06 56.6 105 31.4
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 6.1e-06 55.5 26 92.3


User provided reference genes

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