Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 0.0e+00 1332.4 677 100.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.8e-277 959.1 605 79.8
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 4.3e-268 927.9 604 77.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 5.5e-263 911.0 588 77.9
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 6.5e-248 860.9 599 73.5
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.6e-238 828.6 613 70.1
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.5e-236 823.2 624 69.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-236 822.8 605 69.8
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.7e-232 809.7 589 69.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 3.2e-231 805.4 607 67.7
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.2e-230 803.5 604 67.1
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.2e-230 803.5 609 68.1
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.6e-230 803.1 624 66.3
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 2.1e-230 802.7 592 68.9
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.0e-229 798.5 590 68.3
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.8e-229 797.7 593 68.1
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 3.4e-228 795.4 590 68.3
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.7e-227 793.1 588 68.0
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.2e-227 792.7 588 67.3
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 2.8e-227 792.3 605 66.0
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.8e-227 792.3 588 66.0
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 5.9e-225 784.6 611 65.5
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 1.5e-220 770.0 590 67.5
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 9.8e-220 767.3 583 65.7
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.7e-219 766.5 573 68.1
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.7e-219 766.5 583 65.7
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.8e-219 765.8 607 64.7
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 8.3e-219 764.2 607 64.6
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.1e-218 763.8 630 63.5
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.8e-218 763.1 604 64.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 9.2e-218 760.8 607 64.3
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 4.5e-217 758.4 604 63.2
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 5.9e-217 758.1 605 64.0
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.7e-216 756.5 606 63.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.5e-215 753.4 607 63.9
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.5e-215 752.7 586 65.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.2e-214 750.4 606 63.5
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.1e-214 749.6 597 64.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.6e-214 748.8 603 64.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 8.0e-214 747.7 521 70.4
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.0e-213 745.3 592 64.4
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 6.8e-213 744.6 577 64.0
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 9.8e-212 740.7 587 62.0
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.3e-211 740.3 604 64.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.7e-211 738.8 513 71.5
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.7e-211 738.8 605 62.8
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 4.9e-211 738.4 605 61.8
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.1e-210 737.3 605 61.5
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.1e-210 735.3 605 62.5
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 7.0e-210 734.6 512 70.1
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.6e-209 733.4 598 61.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.0e-209 733.0 585 62.7
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.0e-209 731.5 605 62.1
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.3e-208 729.6 587 62.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 6.6e-208 728.0 599 62.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.5e-207 726.9 651 59.9
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.9e-207 726.5 590 62.5
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 4.3e-207 725.3 619 58.6
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.6e-206 723.4 586 62.5
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 3.6e-206 722.2 586 62.1
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 6.2e-206 721.5 576 64.2
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.8e-205 719.9 620 59.5
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 5.2e-205 718.4 598 60.4
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 8.9e-205 717.6 599 62.1
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.2e-204 717.2 602 60.3
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.5e-204 716.8 543 66.9
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.6e-204 716.1 598 60.2
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 9.8e-204 714.1 602 60.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.3e-203 713.8 598 60.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.7e-203 712.2 598 59.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.9e-203 711.8 593 63.1
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 4.9e-203 711.8 597 62.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.1e-202 710.7 793 50.2
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 7.0e-202 708.0 586 60.4
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 6.0e-201 704.9 598 59.4
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 3.3e-199 699.1 593 60.7
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.3e-199 699.1 584 62.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 5.6e-199 698.4 586 61.6
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.6e-198 696.8 589 60.8
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 3.1e-197 692.6 580 60.3
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.2e-196 690.6 591 61.4
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.5e-196 690.3 578 60.2
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.9e-194 683.3 579 59.8
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.3e-192 677.2 522 64.0
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 2.9e-187 659.4 615 56.6
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.5e-183 647.1 564 61.2
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.4e-178 629.8 511 62.0
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 6.0e-177 625.2 548 58.9
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.6e-174 617.1 610 56.1
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.6e-172 609.8 485 62.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 7.6e-172 608.2 592 54.1
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 5.4e-170 602.1 601 53.2
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 6.2e-166 588.6 473 64.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.0e-165 585.9 613 50.9
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 9.0e-165 584.7 644 50.3
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.2e-162 575.9 356 78.4
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 3.3e-159 566.2 606 50.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 7.4e-127 458.8 447 52.8
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 2.9e-123 446.8 375 57.9
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.2e-118 430.6 560 43.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 4.1e-117 426.4 506 45.1
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 4.1e-117 426.4 304 69.7
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 7.2e-114 415.6 335 61.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 7.2e-114 415.6 516 43.0
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 4.5e-108 396.4 553 40.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.6e-82 309.7 275 58.9
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 4.7e-81 306.6 216 72.2
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 5.8e-79 299.7 216 71.8
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 9.9e-79 298.9 418 43.3
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 2.1e-76 291.2 583 32.6
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.7e-75 288.1 311 46.9
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 4.3e-74 283.5 181 79.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 7.3e-74 282.7 293 51.9
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.1e-69 268.9 358 38.3
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.9e-52 209.5 187 58.8
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 1.9e-42 178.3 112 75.9
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.3e-41 175.6 123 65.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.1e-36 158.3 122 68.0
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 8.7e-35 152.9 112 67.9
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.7e-34 150.2 269 37.9
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.6e-28 132.1 100 62.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.6e-28 132.1 566 22.8
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.7e-28 131.3 112 59.8
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 3.3e-26 124.4 372 28.0
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.3e-25 120.2 178 41.0
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.1e-24 119.4 170 44.1
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.7e-22 112.1 74 70.3
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 6.5e-22 110.2 85 64.7
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.5e-21 108.2 77 59.7
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 4.2e-21 107.5 82 57.3
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.2e-20 105.9 80 57.5
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.1e-18 99.4 94 46.8
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.6e-18 98.2 130 41.5
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.2e-17 95.1 86 50.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 5.0e-14 84.0 329 24.6
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 9.4e-13 79.7 58 70.7
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.7e-12 77.4 153 35.3
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.0e-11 76.3 60 60.0
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 1.4e-11 75.9 81 51.9
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 2.2e-09 68.6 109 39.4
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 4.8e-09 67.4 138 34.8
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 3.1e-08 64.7 88 42.0
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 5.3e-08 63.9 438 24.0


User provided reference genes

Program Settings