Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07575 Striga asiatica HOM05D006479 ORTHO05D008310 1.1e-181 639.8 310 100.0
MSTRG.17656 Avicennia marina HOM05D006479 ORTHO05D008310 2.5e-114 416.0 431 52.9
Migut.N02413 Erythranthe guttata HOM05D006479 ORTHO05D008310 9.3e-109 397.5 432 50.5
Haze_23643 Corylus avellana HOM05D006479 ORTHO05D008310 2.6e-90 336.3 334 53.3
Oeu025955.1 Olea europaea HOM05D006479 ORTHO05D008310 5.7e-90 335.1 431 45.5
CAN.G280.16 Capsicum annuum HOM05D006479 ORTHO05D008310 2.2e-89 333.2 447 42.5
Cfa010250 Carpinus fangiana HOM05D006479 ORTHO05D008310 1.4e-88 330.5 348 49.7
Lj2C905T5 Lonicera japonica HOM05D006479 ORTHO05D008310 1.8e-88 330.1 448 43.8
Sopen11g029700 Solanum pennellii HOM05D006479 ORTHO05D008310 1.2e-87 327.4 438 42.7
Cc01_g07460 Coffea canephora HOM05D006479 ORTHO05D008310 1.5e-87 327.0 440 43.9
Solyc11g072050.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 3.4e-87 325.9 438 42.5
CSS0011125 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 1.0e-86 324.3 448 42.2
CSS0016000 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 1.0e-86 324.3 448 42.2
PGSC0003DMG400027398 Solanum tuberosum HOM05D006479 ORTHO05D008310 3.8e-86 322.4 438 42.0
Rhsim13G0200600 Rhododendron simsii HOM05D006479 ORTHO05D008310 8.5e-86 321.2 450 41.6
Oeu032070.1 Olea europaea HOM05D006479 ORTHO05D008310 1.9e-85 320.1 428 43.9
Hma1.2p1_0218F.1_g092540 Hydrangea macrophylla HOM05D006479 ORTHO05D008310 4.2e-85 318.9 453 42.2
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 6.1e-84 315.1 427 44.0
Actinidia07016 Actinidia chinensis HOM05D006479 ORTHO05D008310 3.9e-83 312.4 450 40.7
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 8.8e-83 311.2 427 43.8
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 2.0e-82 310.1 426 43.7
Manes.04G055500 Manihot esculenta HOM05D006479 ORTHO05D008310 4.4e-82 308.9 429 42.0
Cpa.g.sc103.78 Carica papaya HOM05D006479 ORTHO05D008310 7.4e-82 308.1 436 42.4
TWI31G0851 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 7.4e-82 308.1 430 41.9
CiPaw.14G092100 Carya illinoinensis HOM05D006479 ORTHO05D008310 1.7e-81 307.0 451 41.2
HanXRQChr16g0509731 Helianthus annuus HOM05D006479 ORTHO05D008310 1.7e-81 307.0 453 41.5
TWI79G0137 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 2.2e-81 306.6 431 41.1
Thecc.09G263400 Theobroma cacao HOM05D006479 ORTHO05D008310 1.4e-80 303.9 429 40.8
Nitab4.5_0006265g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.4e-80 303.1 432 40.7
Sopen06g030060 Solanum pennellii HOM05D006479 ORTHO05D008310 2.4e-80 303.1 437 41.9
PGSC0003DMG400005946 Solanum tuberosum HOM05D006479 ORTHO05D008310 2.4e-80 303.1 438 41.3
DCAR_002128 Daucus carota HOM05D006479 ORTHO05D008310 9.1e-80 301.2 441 41.3
Potri.009G157900 Populus trichocarpa HOM05D006479 ORTHO05D008310 9.1e-80 301.2 440 40.2
Solyc06g073650.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 9.1e-80 301.2 437 41.6
Ciclev10014249m.g Citrus clementina HOM05D006479 ORTHO05D008310 1.6e-79 300.4 427 41.9
ClCG02G024250 Citrullus lanatus HOM05D006479 ORTHO05D008310 1.0e-78 297.7 431 40.8
QL01p020440 Quercus lobata HOM05D006479 ORTHO05D008310 1.0e-78 297.7 446 39.9
CsaV3_4G017380 Cucumis sativus L. HOM05D006479 ORTHO05D008310 2.2e-78 296.6 434 40.8
COL.COLO4_25288 Corchorus olitorius HOM05D006479 ORTHO05D008310 2.9e-78 296.2 440 40.0
MELO3C014710.2 Cucumis melo HOM05D006479 ORTHO05D008310 2.9e-78 296.2 433 41.6
Duzib168G1317 Durio zibethinus HOM05D006479 ORTHO05D008310 3.8e-78 295.8 425 41.6
Prupe.6G152700 Prunus persica HOM05D006479 ORTHO05D008310 6.5e-78 295.0 366 44.5
Sabra09G0123500 Salix brachista HOM05D006479 ORTHO05D008310 8.5e-78 294.7 429 39.6
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 1.5e-77 293.9 361 45.2
Duzib150G0338 Durio zibethinus HOM05D006479 ORTHO05D008310 1.5e-77 293.9 428 40.4
EL10Ac7g16227 Beta vulgaris HOM05D006479 ORTHO05D008310 3.2e-77 292.7 367 45.0
TAR633G1538 Trochodendron aralioides HOM05D006479 ORTHO05D008310 5.5e-77 292.0 369 44.7
RcHm_v2.0_Chr5g0049781 Rosa chinensis HOM05D006479 ORTHO05D008310 9.4e-77 291.2 450 40.0
Sc21g0006530 Simmondsia chinensis HOM05D006479 ORTHO05D008310 2.1e-76 290.0 435 40.5
Migut.D00711 Erythranthe guttata HOM05D006479 ORTHO05D008310 3.6e-76 289.3 432 41.2
AUR62001606 Chenopodium quinoa HOM05D006479 ORTHO05D008310 1.0e-75 287.7 359 44.6
Eucgr.J00620 Eucalyptus grandis HOM05D006479 ORTHO05D008310 1.4e-75 287.3 358 43.0
PGR119G2537 Punica granatum HOM05D006479 ORTHO05D008310 1.4e-75 287.3 362 43.6
arahy.Tifrunner.gnm1.ann1.K8UYYD Arachis hypogaea HOM05D006479 ORTHO05D008310 1.8e-75 287.0 463 39.1
arahy.Tifrunner.gnm1.ann1.Y6PBB0 Arachis hypogaea HOM05D006479 ORTHO05D008310 1.8e-75 287.0 463 39.1
LjContig00564g0006585 Lotus japonicus HOM05D006479 ORTHO05D008310 1.8e-75 287.0 365 43.3
ECA236G3846 Erigeron canadensis HOM05D006479 ORTHO05D008310 3.0e-75 286.2 425 40.7
MD11G1180000 Malus domestica HOM05D006479 ORTHO05D008310 3.0e-75 286.2 449 39.4
Lsat_1_v5_gn_8_104041 Lactuca sativa HOM05D006479 ORTHO05D008310 6.7e-75 285.0 437 39.6
THA.LOC104810966 Tarenaya hassleriana HOM05D006479 ORTHO05D008310 2.0e-74 283.5 439 39.2
MD00G1031900 Malus domestica HOM05D006479 ORTHO05D008310 2.6e-74 283.1 446 39.0
CANSAT54G0955 Cannabis sativa HOM05D006479 ORTHO05D008310 4.4e-74 282.3 434 39.9
Ca_06149_v3 Cicer arietinum L. HOM05D006479 ORTHO05D008310 9.7e-74 281.2 445 38.4
Medtr5g087680 Medicago truncatula HOM05D006479 ORTHO05D008310 1.3e-73 280.8 414 39.6
Glyma.14G044300 Glycine max HOM05D006479 ORTHO05D008310 1.7e-73 280.4 363 41.3
Psat2g023000 Pisum sativum HOM05D006479 ORTHO05D008310 2.2e-73 280.0 457 37.9
GSVIVG01037436001 Vitis vinifera HOM05D006479 ORTHO05D008310 4.8e-73 278.9 353 43.3
VMungo0647G2395 Vigna mungo HOM05D006479 ORTHO05D008310 8.2e-73 278.1 358 40.8
Atru.chr3.2921 Acer truncatum HOM05D006479 ORTHO05D008310 1.1e-72 277.7 436 38.5
FAN11G0648 Fragaria x ananassa HOM05D006479 ORTHO05D008310 4.1e-72 275.8 443 38.8
Lalb_Chr10g0105871 Lupinus albus HOM05D006479 ORTHO05D008310 4.1e-72 275.8 445 38.0
Thhalv10016076m.g Eutrema salsugineum HOM05D006479 ORTHO05D008310 7.0e-72 275.0 447 38.3
FvH4_3g27150 Fragaria vesca HOM05D006479 ORTHO05D008310 7.0e-72 275.0 443 39.1
TPR.G11782 Trifolium pratense HOM05D006479 ORTHO05D008310 7.0e-72 275.0 422 38.6
Glyma.02G273700 Glycine max HOM05D006479 ORTHO05D008310 1.6e-71 273.9 363 40.8
FAN25G2741 Fragaria x ananassa HOM05D006479 ORTHO05D008310 4.5e-71 272.3 443 38.4
FAN16G0753 Fragaria x ananassa HOM05D006479 ORTHO05D008310 5.9e-71 271.9 443 38.6
AL6G32590 Arabidopsis lyrata HOM05D006479 ORTHO05D008310 7.7e-71 271.6 427 38.4
Carub.0006s1934 Capsella rubella HOM05D006479 ORTHO05D008310 7.7e-71 271.6 438 37.4
Aqoxy1G00109 Aquilegia oxysepala HOM05D006479 ORTHO05D008310 1.3e-70 270.8 431 38.1
A10p19030 Brassica napus HOM05D006479 ORTHO05D008310 1.3e-70 270.8 437 37.3
BraA10t43981Z Brassica rapa HOM05D006479 ORTHO05D008310 1.3e-70 270.8 437 37.8
C09p55040 Brassica napus HOM05D006479 ORTHO05D008310 2.9e-70 269.6 359 40.7
BolC9t58367H Brassica oleracea HOM05D006479 ORTHO05D008310 2.9e-70 269.6 359 40.7
Sp6g23500 Schrenkiella parvula HOM05D006479 ORTHO05D008310 3.8e-70 269.2 440 37.7
AT5G21040 Arabidopsis thaliana HOM05D006479 ORTHO05D008310 1.1e-69 267.7 424 38.4
Aa31LG1G13720 Aethionema arabicum HOM05D006479 ORTHO05D008310 7.2e-69 265.0 431 38.3
FAN21G3675 Fragaria x ananassa HOM05D006479 ORTHO05D008310 3.6e-68 262.7 368 41.6
MBI13_g00570_MAGBIO Magnolia biondii HOM05D006479 ORTHO05D008310 1.0e-67 261.2 428 36.9
SHI25344 Sapria himalayana HOM05D006479 ORTHO05D008310 2.3e-67 260.0 425 38.1
Ah.08g222720 Amaranthus hybridus HOM05D006479 ORTHO05D008310 5.2e-67 258.8 448 36.6
CARHR191830 Cardamine hirsuta HOM05D006479 ORTHO05D008310 4.1e-64 249.2 439 36.0
Os04g0619700 Oryza sativa ssp. japonica HOM05D006479 ORTHO05D008310 5.0e-62 242.3 370 37.0
PSO339G5772 Papaver somniferum HOM05D006479 ORTHO05D008310 1.8e-59 233.8 451 35.7
PSO384G3454 Papaver somniferum HOM05D006479 ORTHO05D008310 2.3e-59 233.4 452 34.5
CDE08G0797 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 4.0e-59 232.6 349 38.7
ATR0068G008 Amborella trichopoda HOM05D006479 ORTHO05D008310 5.2e-59 232.3 443 32.7
CDE02G1192 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 6.8e-59 231.9 356 38.2
HPP92_021206 Vanilla planifolia HOM05D006479 ORTHO05D008310 6.8e-59 231.9 362 37.6
Nitab4.5_0008289g0040 Nicotiana tabacum HOM05D006479 ORTHO05D008310 1.2e-58 231.1 256 47.7
Nitab4.5_0000205g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.2e-57 226.9 260 46.9
Nn3g20864 Nelumbo nucifera HOM05D006479 ORTHO05D008310 6.3e-57 225.3 151 68.2
Peaxi162Scf00978g00216 Petunia axillaris HOM05D006479 ORTHO05D008310 1.4e-56 224.2 236 50.8
TAR636G1386 Trochodendron aralioides HOM05D006479 ORTHO05D008310 7.0e-56 221.9 159 65.4
Phvul.008G208228 Phaseolus vulgaris HOM05D006479 ORTHO05D008310 3.8e-54 216.1 197 52.8
Zm00001eb431140 Zea mays HOM05D006479 ORTHO05D008310 2.5e-53 213.4 360 34.4
BcaC04g19499 Brassica carinata HOM05D006479 ORTHO05D008310 4.7e-52 209.1 319 39.2
SEGI_01115 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 1.0e-51 208.0 434 32.5
Sed0023099 Sechium edule HOM05D006479 ORTHO05D010107 1.2e-50 204.5 254 45.7
FAN21G1997 Fragaria x ananassa HOM05D006479 ORTHO05D008310 3.4e-50 203.0 161 60.2
SEGI_34026 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 5.6e-45 185.7 375 30.9
Pp3c4_8230 Physcomitrium patens HOM05D006479 ORTHO05D008310 3.7e-41 172.9 359 29.2
Mapoly0060s0027 Marchantia polymorpha HOM05D006479 ORTHO05D008310 7.0e-40 168.7 364 28.6
SMO358G0705 Selaginella moellendorffii HOM05D006479 ORTHO05D008310 7.5e-34 148.7 347 28.8
CAN.G65.211 Capsicum annuum HOM05D006479 ORTHO05D008310 6.9e-19 99.0 80 57.5
Nitab4.5_0000271g0270 Nicotiana tabacum HOM05D006479 ORTHO05D008310 6.9e-19 99.0 135 43.7
Nitab4.5_0000271g0260 Nicotiana tabacum HOM05D006479 ORTHO05D008310 9.0e-19 98.6 56 66.1
SGA_v2.0_scaffold92G28170 Striga asiatica HOM05D006479 ORTHO05D008310 8.4e-17 92.0 109 48.6
Atru.chr10.1113 Acer truncatum HOM05D001335 ORTHO05D001184 5.8e-10 69.3 151 31.8
Cre07.g355750 Chlamydomonas reinhardtii HOM05D006479 ORTHO05D008310 8.4e-09 65.5 189 24.9
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 8.4e-09 65.5 282 23.4
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 4.2e-08 63.2 145 31.0
arahy.Tifrunner.gnm1.ann1.GQT8P7 Arachis hypogaea HOM05D001335 ORTHO05D001184 7.1e-08 62.4 167 31.7
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.6e-07 61.2 145 33.1
arahy.Tifrunner.gnm1.ann1.ITY2T4 Arachis hypogaea HOM05D001335 ORTHO05D001184 2.1e-07 60.8 147 32.0
MD01G1195600 Malus domestica HOM05D001335 ORTHO05D001184 6.0e-07 59.3 116 31.9
GSVIVG01007589001 Vitis vinifera HOM05D000453 ORTHO05D000387 6.0e-07 59.3 144 29.2
Potri.014G077800 Populus trichocarpa HOM05D001335 ORTHO05D001184 1.8e-06 57.8 144 28.5
Lalb_Chr03g0024221 Lupinus albus HOM05D000453 ORTHO05D000387 2.3e-06 57.4 205 23.4
MD07G1262400 Malus domestica HOM05D001335 ORTHO05D001184 2.3e-06 57.4 116 31.9
Sabra14G0054600 Salix brachista HOM05D001335 ORTHO05D001184 2.3e-06 57.4 144 27.8
Nitab4.5_0007088g0030 Nicotiana tabacum HOM05D001335 ORTHO05D001184 3.0e-06 57.0 138 32.6
HPP92_006712 Vanilla planifolia HOM05D000453 ORTHO05D000387 3.0e-06 57.0 141 28.4
Zm00001eb121510 Zea mays HOM05D001335 ORTHO05D001184 3.0e-06 57.0 143 28.7
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 5.1e-06 56.2 281 22.1
CiPaw.03G101500 Carya illinoinensis HOM05D001335 ORTHO05D001184 6.7e-06 55.8 146 29.5
Thecc.01G155400 Theobroma cacao HOM05D001335 ORTHO05D001184 6.7e-06 55.8 143 27.3
CAN.G428.4 Capsicum annuum HOM05D001335 ORTHO05D001184 8.7e-06 55.5 146 32.2
CiPaw.04G068700 Carya illinoinensis HOM05D001335 ORTHO05D001184 8.7e-06 55.5 116 31.0
SMO236G0112 Selaginella moellendorffii HOM05D004736 ORTHO05D006424 8.7e-06 55.5 103 26.2


User provided reference genes

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