Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 0.0e+00 1229.9 633 100.0
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.3e-226 790.0 654 67.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.6e-219 766.5 654 65.6
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 6.2e-208 728.0 649 62.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.2e-206 723.8 649 62.1
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 9.8e-198 694.1 642 60.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.9e-197 691.8 653 59.4
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 6.4e-197 691.4 637 61.4
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.7e-194 683.3 653 58.7
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.5e-193 679.5 646 59.8
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 8.1e-192 674.5 653 58.7
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 8.1e-192 674.5 644 60.1
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.9e-189 666.0 641 59.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.4e-188 663.7 633 58.6
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 3.0e-186 656.0 643 58.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 3.0e-186 656.0 643 58.2
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.1e-184 649.8 636 57.5
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.2e-183 645.2 649 57.3
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.2e-182 644.0 638 57.5
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.1e-180 637.5 649 56.7
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 5.4e-180 635.2 641 57.6
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 1.0e-178 630.9 652 56.1
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.7e-178 630.2 607 59.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.7e-178 630.2 650 56.5
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 3.9e-178 629.0 642 55.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.1e-177 627.5 643 57.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.3e-177 625.9 653 54.2
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 3.6e-176 622.5 646 56.2
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.8e-176 622.1 640 55.9
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 4.8e-176 622.1 653 55.0
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.1e-175 620.9 641 55.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.4e-175 619.8 645 55.7
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.0e-175 619.0 649 55.3
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 1.2e-174 617.5 647 54.3
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.4e-174 615.9 652 55.7
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 5.8e-174 615.1 649 54.9
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.8e-174 615.1 651 56.1
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.9e-173 612.8 641 55.2
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.9e-173 612.8 648 54.3
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.8e-173 612.5 641 55.2
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 3.8e-173 612.5 636 55.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 8.4e-173 611.3 644 53.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.4e-172 608.6 641 54.9
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.3e-170 604.0 651 54.1
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.1e-169 600.9 648 54.3
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.5e-169 599.7 644 53.1
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.6e-168 597.0 660 53.2
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.1e-167 594.3 660 53.6
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.1e-167 592.8 562 60.1
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.9e-167 591.7 660 53.3
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.0e-167 591.3 660 53.3
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-166 590.5 660 53.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-166 590.5 660 53.6
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 4.5e-166 589.0 633 53.7
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-165 587.0 660 53.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.2e-165 586.6 660 53.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 6.4e-165 585.1 645 52.2
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.4e-165 585.1 660 53.0
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.4e-165 584.7 655 52.1
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.4e-164 583.2 651 53.1
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.0e-162 577.8 641 53.7
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-162 577.4 643 53.3
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-162 577.0 645 53.0
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.8e-162 577.0 641 52.7
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.0e-162 576.2 641 53.4
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 6.7e-162 575.1 643 52.7
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 6.7e-162 575.1 658 50.8
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 8.7e-162 574.7 657 51.8
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.1e-159 566.2 650 50.9
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.5e-158 563.9 640 50.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 5.8e-158 562.0 601 54.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 2.2e-157 560.1 633 52.1
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 3.8e-157 559.3 642 51.7
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.5e-156 556.6 647 49.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.2e-155 554.3 646 51.1
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.9e-155 551.6 637 49.1
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.0e-154 549.7 657 50.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.8e-151 540.4 653 47.8
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.4e-151 540.0 644 50.6
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.4e-151 540.0 637 50.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 4.1e-151 539.3 650 48.9
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.4e-150 536.2 650 47.7
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.3e-149 534.3 633 48.5
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.4e-148 530.8 655 47.8
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 3.6e-147 526.2 648 45.5
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.6e-147 526.2 646 49.2
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 8.7e-146 521.5 654 46.2
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 2.5e-145 520.0 657 46.4
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 4.1e-143 512.7 636 47.6
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 9.4e-140 501.5 633 47.6
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.2e-139 501.1 652 45.4
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 8.8e-138 495.0 639 45.5
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 3.3e-137 493.0 600 49.7
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.3e-136 491.1 650 48.2
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.2e-136 490.3 654 46.2
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.4e-135 486.9 614 47.2
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 7.7e-134 481.9 412 63.6
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 8.5e-133 478.4 651 43.5
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.3e-125 454.5 621 45.2
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.4e-122 444.5 668 41.0
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.8e-122 444.1 589 47.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.6e-121 440.3 634 45.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.2e-120 437.2 637 43.8
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.8e-120 436.8 664 42.2
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.3e-120 435.6 634 43.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 5.3e-119 432.6 414 58.0
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.2e-117 427.2 659 41.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.5e-117 425.6 340 68.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.1e-116 424.9 410 58.0
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.0e-114 418.3 414 57.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-113 414.1 635 43.1
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 8.3e-112 408.7 523 47.2
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 7.2e-108 395.6 401 54.9
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-101 375.2 631 40.4
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 2.5e-100 370.5 630 40.3
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 4.3e-100 369.8 630 39.7
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 7.3e-100 369.0 621 39.9
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.1e-99 367.5 630 39.8
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-98 364.8 633 39.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 5.2e-98 362.8 634 40.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 5.9e-94 349.4 332 58.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.2e-91 341.7 638 38.1
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.2e-80 304.3 415 45.3
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.1e-79 300.1 412 43.4
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.5e-76 291.6 606 34.0
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.9e-76 291.2 688 32.6
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.3e-74 284.3 608 34.5
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 8.6e-69 265.8 598 35.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-67 260.4 605 34.0
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-66 258.8 607 32.9
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-63 247.7 532 33.8
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-55 221.1 558 31.2
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 5.3e-50 203.4 541 32.7
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 6.7e-45 186.4 648 28.5
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 9.6e-44 182.6 163 63.2
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.1e-43 181.4 303 41.6
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 9.0e-42 176.0 309 38.8
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-38 164.9 196 55.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-37 162.2 164 57.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 2.3e-37 161.4 115 70.4
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 7.4e-36 156.4 159 55.3
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 8.2e-35 152.9 75 100.0
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.4e-31 142.1 147 57.8
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 6.7e-29 133.3 94 71.3
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 5.7e-28 130.2 105 64.8
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 2.8e-27 127.9 94 68.1
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.7e-27 127.5 128 59.4
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 5.3e-26 123.6 90 72.2
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 6.9e-26 123.2 98 67.3
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-25 122.5 157 51.0
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-25 122.1 362 29.3
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 5.5e-23 113.6 190 38.9
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 5.5e-23 113.6 89 64.0
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.1e-22 111.7 74 75.7
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 3.6e-22 110.9 89 61.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 3.9e-21 107.5 89 61.8
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 6.7e-21 106.7 127 47.2
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.5e-20 105.5 339 25.7
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.8e-19 100.5 108 54.6
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 9.4e-15 86.3 90 50.0
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 7.9e-14 83.2 216 33.3
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-12 79.3 216 32.4
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.1e-12 79.3 216 32.4
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 5.7e-12 77.0 179 36.9
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-11 74.7 57 66.7
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-11 74.3 82 51.2
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.4e-10 72.4 51 68.6
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-09 67.0 78 44.9
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-08 65.9 98 38.8
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 1.6e-06 58.9 97 40.2
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 4.7e-06 57.4 69 43.5
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 8.0e-06 56.6 48 50.0


User provided reference genes

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