Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.2e-121 439.9 231 100.0
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 5.7e-111 404.4 231 91.8
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.7e-111 404.4 231 90.9
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 7.4e-111 404.1 233 90.6
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 1.3e-110 403.3 222 94.1
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 2.2e-110 402.5 224 92.9
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 2.8e-110 402.1 231 92.2
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.1e-109 400.2 231 89.2
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.4e-109 399.8 231 90.9
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.8e-109 399.4 220 92.7
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 9.1e-109 397.1 231 90.5
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.2e-108 396.7 231 91.3
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 1.2e-108 396.7 225 91.6
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.0e-108 396.0 228 91.7
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 2.0e-108 396.0 225 92.0
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 4.5e-108 394.8 233 90.6
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 7.7e-108 394.0 225 89.3
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.7e-107 392.9 225 90.2
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 1.7e-107 392.9 231 90.0
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.7e-107 392.9 231 90.0
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 3.8e-107 391.7 223 91.5
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 6.5e-107 391.0 225 88.0
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 8.5e-107 390.6 228 88.6
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 1.1e-106 390.2 233 90.1
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.9e-106 389.4 225 89.3
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.9e-106 389.4 225 89.3
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 3.2e-106 388.7 225 88.9
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 4.2e-106 388.3 232 87.5
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.2e-106 388.3 231 90.0
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 5.5e-106 387.9 237 86.5
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 9.4e-106 387.1 226 89.4
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.2e-105 386.7 229 88.6
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.2e-105 386.7 231 89.6
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.6e-105 386.3 227 90.3
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 2.1e-105 386.0 225 87.1
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 2.1e-105 386.0 222 89.6
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.7e-105 385.6 230 88.3
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 6.1e-105 384.4 225 88.4
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 6.1e-105 384.4 226 88.9
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 6.1e-105 384.4 221 89.1
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 8.0e-105 384.0 230 87.0
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 8.0e-105 384.0 224 88.4
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.0e-104 383.6 225 89.3
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 1.0e-104 383.6 222 88.7
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 3.0e-104 382.1 229 89.1
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 86.1
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 6.7e-104 380.9 227 89.0
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 1.1e-103 380.2 228 87.7
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.1e-103 380.2 227 87.2
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-103 380.2 225 88.0
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.0e-103 379.4 227 86.8
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.0e-103 379.4 225 87.6
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 2.0e-103 379.4 227 87.2
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 3.3e-103 378.6 228 87.7
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 4.4e-103 378.3 224 88.8
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.7e-103 377.9 224 87.1
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 5.7e-103 377.9 222 86.5
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 5.7e-103 377.9 231 87.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 5.7e-103 377.9 224 88.4
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 5.7e-103 377.9 227 86.8
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 9.7e-103 377.1 225 88.4
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 9.7e-103 377.1 226 86.7
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 9.7e-103 377.1 228 86.0
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.7e-103 377.1 222 88.3
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 9.7e-103 377.1 221 88.7
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.3e-102 376.7 226 87.2
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.7e-102 376.3 225 88.4
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 2.2e-102 375.9 227 86.3
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.8e-102 375.6 229 86.9
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.7e-102 375.2 229 87.3
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 4.8e-102 374.8 227 86.8
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 6.3e-102 374.4 228 85.1
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.1e-101 373.6 225 86.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.1e-101 373.6 225 85.8
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.1e-101 373.6 225 86.2
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.1e-101 373.6 212 91.0
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.4e-101 373.2 225 87.6
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.4e-101 373.2 225 87.1
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.4e-101 373.2 225 87.6
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.4e-101 373.2 225 85.8
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.8e-101 372.9 225 87.1
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.4e-101 372.5 225 86.7
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.4e-101 372.5 225 86.7
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 3.1e-101 372.1 231 86.6
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 5.3e-101 371.3 226 86.3
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 7.0e-101 370.9 225 85.3
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 7.0e-101 370.9 227 86.3
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.6e-100 369.8 306 69.3
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.0e-100 369.4 225 84.0
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 2.6e-100 369.0 227 85.9
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.5e-100 368.6 226 85.4
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 3.5e-100 368.6 229 85.2
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 4.5e-100 368.2 226 86.3
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 4.5e-100 368.2 225 86.2
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 4.5e-100 368.2 225 85.3
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 5.9e-100 367.9 225 86.2
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 5.9e-100 367.9 225 86.2
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 5.9e-100 367.9 225 86.2
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 7.7e-100 367.5 228 84.6
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 7.7e-100 367.5 228 82.5
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.3e-99 366.7 225 85.8
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.3e-99 366.7 210 91.0
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.7e-99 366.3 226 85.8
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.9e-99 365.5 254 77.6
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 3.8e-99 365.2 227 85.5
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 5.0e-99 364.8 226 84.5
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 6.5e-99 364.4 229 83.8
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 2.5e-98 362.5 226 85.0
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 3.2e-98 362.1 223 82.5
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 3.2e-98 362.1 215 86.0
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 5.2e-96 354.8 226 83.2
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 6.7e-96 354.4 220 82.3
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.7e-89 332.4 231 79.7
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 8.0e-89 330.9 189 91.5
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.1e-85 320.5 214 75.7
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.4e-85 319.3 211 78.7
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 2.3e-83 312.8 215 76.7
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.5e-82 310.1 190 87.9
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.7e-81 305.1 179 91.1
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.6e-79 299.3 163 97.5
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 2.7e-76 289.3 194 82.5
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 2.7e-76 289.3 207 73.4
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 4.3e-74 282.0 175 82.9
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.8e-72 276.6 192 79.2
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.3e-72 276.2 159 91.2
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 6.8e-72 274.6 156 91.7
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.6e-71 272.7 156 91.0
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.4e-71 271.9 180 79.4
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 2.2e-70 269.6 156 89.1
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 4.1e-69 265.4 161 86.3
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-67 259.6 184 73.9
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 6.6e-59 231.5 156 76.9
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.7e-54 216.9 156 77.6
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 1.9e-50 203.4 161 70.2
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 6.0e-44 181.8 103 94.2
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.3e-43 179.9 110 88.2
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 2.1e-41 173.3 103 90.3
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.9e-35 152.5 156 57.7
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.8e-33 145.6 88 88.6
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.0e-27 127.9 77 81.8
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 5.6e-26 122.1 206 38.8
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 9.0e-24 114.8 64 87.5
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.3e-22 110.9 81 72.8
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 4.6e-20 102.4 63 81.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.4e-16 90.1 66 71.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 3.4e-15 86.3 63 68.3
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.8e-11 73.9 50 74.0


User provided reference genes

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