Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 2.7e-74 282.0 144 100.0
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 3.6e-23 112.1 67 88.1
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 1.8e-22 109.8 60 95.0
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 2.1e-18 96.3 86 59.3
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 2.8e-15 85.9 64 68.8
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 4.5e-13 78.6 66 56.1
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 7.6e-13 77.8 58 65.5
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 9.9e-13 77.4 66 57.6
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 1.3e-12 77.0 62 59.7
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.3e-12 77.0 62 59.7
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.3e-12 77.0 62 59.7
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.3e-12 77.0 58 65.5
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.3e-12 77.0 58 65.5
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 1.3e-12 77.0 66 56.1
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 1.7e-12 76.6 110 40.9
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 2.9e-12 75.9 63 69.8
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 4.9e-12 75.1 62 58.1
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 8.4e-12 74.3 66 57.6
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 1.1e-11 73.9 75 50.7
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 1.1e-11 73.9 63 52.4
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 1.1e-11 73.9 65 53.8
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 1.4e-11 73.6 59 64.4
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 1.9e-11 73.2 58 62.1
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 1.9e-11 73.2 63 60.3
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 1.9e-11 73.2 59 55.9
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 1.9e-11 73.2 58 62.1
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 1.9e-11 73.2 58 62.1
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 2.4e-11 72.8 58 63.8
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 2.4e-11 72.8 66 53.0
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 2.4e-11 72.8 66 54.5
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.2e-11 72.4 63 58.7
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.2e-11 72.4 63 58.7
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 4.2e-11 72.0 62 59.7
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 4.2e-11 72.0 59 54.2
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 4.2e-11 72.0 60 58.3
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 5.4e-11 71.6 62 59.7
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 7.1e-11 71.2 60 60.0
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 7.1e-11 71.2 66 51.5
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 7.1e-11 71.2 66 51.5
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 9.3e-11 70.9 60 56.7
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 9.3e-11 70.9 58 60.3
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 1.6e-10 70.1 66 51.5
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 1.6e-10 70.1 59 57.6
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 2.7e-10 69.3 54 63.0
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 3.5e-10 68.9 62 54.8
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 3.5e-10 68.9 62 53.2
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 3.5e-10 68.9 62 53.2
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 4.6e-10 68.6 60 55.0
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 4.6e-10 68.6 69 46.4
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 4.6e-10 68.6 62 56.5
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 6.0e-10 68.2 55 65.5
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 7.9e-10 67.8 65 52.3
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 7.9e-10 67.8 65 52.3
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 1.3e-09 67.0 59 57.6
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 1.8e-09 66.6 58 56.9
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 3.0e-09 65.9 90 40.0
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 3.0e-09 65.9 58 55.2
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 3.0e-09 65.9 62 56.5
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 3.9e-09 65.5 60 50.0
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 5.1e-09 65.1 59 59.3
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 5.1e-09 65.1 59 59.3
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 6.7e-09 64.7 58 53.4
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 1.1e-08 63.9 58 55.2
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 1.1e-08 63.9 56 57.1
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 1.5e-08 63.5 56 55.4
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 1.5e-08 63.5 56 55.4
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 1.5e-08 63.5 56 55.4
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 1.5e-08 63.5 56 55.4
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 1.5e-08 63.5 56 55.4
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 1.5e-08 63.5 45 75.6
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 1.9e-08 63.2 56 55.4
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.9e-08 63.2 67 46.3
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 1.9e-08 63.2 59 55.9
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 3.3e-08 62.4 56 53.6
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 3.3e-08 62.4 58 53.4
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 1.3e-07 60.5 67 44.8
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 1.3e-07 60.5 55 60.0
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 1.6e-07 60.1 55 56.4
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 2.1e-07 59.7 59 52.5
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 4.8e-07 58.5 59 54.2
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 1.8e-06 56.6 64 37.5
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 2.4e-06 56.2 86 37.2
SGA_v2.0_scaffold7G03921 Striga asiatica HOM05D002020 ORTHO05D002046 2.4e-06 56.2 47 63.8
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 6.9e-06 54.7 59 49.2
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 6.9e-06 54.7 61 42.6


User provided reference genes

Program Settings