Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07518 Striga asiatica HOM05D005139 ORTHO05D006125 1.2e-67 259.6 122 100.0
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 7.1e-20 100.9 125 50.4
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 7.6e-14 80.9 125 38.4
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.9e-12 76.3 125 42.4
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.9e-12 76.3 125 42.4
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 7.9e-11 70.9 95 47.4
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 1.0e-10 70.5 123 35.8
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.0e-10 68.9 123 35.8
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 1.5e-09 66.6 125 32.8
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 3.3e-09 65.5 122 32.8
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.3e-08 63.5 93 41.9
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 1.3e-08 63.5 125 32.8
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.1e-08 62.8 116 34.5
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.8e-08 62.4 116 34.5
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 3.7e-08 62.0 116 36.2
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 8.1e-08 60.8 117 33.3
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.1e-07 60.5 122 31.1
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 1.1e-07 60.5 123 31.7
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 1.4e-07 60.1 132 29.5
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 1.8e-07 59.7 116 33.6
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 1.8e-07 59.7 116 33.6
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 2.4e-07 59.3 123 30.9
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 2.4e-07 59.3 123 30.9
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 3.1e-07 58.9 116 32.8
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 3.1e-07 58.9 123 32.5
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 5.3e-07 58.2 116 33.6
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 5.3e-07 58.2 116 34.5
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 5.3e-07 58.2 123 30.9
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 5.3e-07 58.2 123 30.9
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 6.9e-07 57.8 111 32.4
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 9.0e-07 57.4 116 32.8
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 9.0e-07 57.4 116 31.0
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 9.0e-07 57.4 116 31.0
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.5e-06 56.6 123 30.9
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.5e-06 56.6 115 29.6
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 2.0e-06 56.2 116 31.9
C04p45140 Brassica napus HOM05D000298 ORTHO05D000553 2.0e-06 56.2 79 43.0
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 2.0e-06 56.2 118 30.5
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 2.0e-06 56.2 117 31.6
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.6e-06 55.8 116 31.9
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 2.6e-06 55.8 116 31.9
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 2.6e-06 55.8 116 31.9
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 2.6e-06 55.8 116 31.9
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 2.6e-06 55.8 117 29.9
Actinidia00283 Actinidia chinensis HOM05D000298 ORTHO05D015799 3.4e-06 55.5 27 96.3
Actinidia24005 Actinidia chinensis HOM05D000298 ORTHO05D000553 3.4e-06 55.5 27 96.3
Actinidia33127 Actinidia chinensis HOM05D000298 ORTHO05D000553 3.4e-06 55.5 27 96.3
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 3.4e-06 55.5 127 32.3
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 3.4e-06 55.5 121 30.6
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 3.4e-06 55.5 141 31.9
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 4.5e-06 55.1 116 31.9
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 4.5e-06 55.1 119 29.4
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 4.5e-06 55.1 118 32.2
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 5.8e-06 54.7 119 29.4
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 5.8e-06 54.7 119 29.4
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 5.8e-06 54.7 119 29.4
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 5.8e-06 54.7 106 33.0
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 5.8e-06 54.7 129 29.5
DCAR_021876 Daucus carota HOM05D000298 ORTHO05D000553 7.6e-06 54.3 27 92.6
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 7.6e-06 54.3 123 32.5
Lsat_1_v5_gn_9_73020 Lactuca sativa HOM05D000298 ORTHO05D000553 7.6e-06 54.3 27 92.6
ECA246G0253 Erigeron canadensis HOM05D000298 ORTHO05D000553 1.0e-05 53.9 27 92.6


User provided reference genes

Program Settings