Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38716 Striga asiatica HOM05D002076 ORTHO05D002087 5.5e-147 524.2 259 100.0
SGA_v2.0_scaffold253G45166 Striga asiatica HOM05D002076 ORTHO05D002087 1.0e-28 131.3 112 66.1
SGA_v2.0_scaffold130G34300 Striga asiatica HOM05D002076 ORTHO05D404172 1.3e-26 124.4 74 83.8
SGA_v2.0_scaffold96G29021 Striga asiatica HOM05D002076 ORTHO05D002087 2.8e-26 123.2 162 50.6
Migut.F00030 Erythranthe guttata HOM05D002076 ORTHO05D002087 2.7e-24 116.7 112 60.7
SGA_v2.0_scaffold47G17621 Striga asiatica HOM05D002076 ORTHO05D002087 3.0e-20 103.2 112 53.6
MSTRG.24114 Avicennia marina HOM05D002076 ORTHO05D002087 3.4e-19 99.8 112 53.6
SGA_v2.0_scaffold34G13695 Striga asiatica HOM05D002076 ORTHO05D002087 2.8e-18 96.7 112 52.7
Migut.K01480 Erythranthe guttata HOM05D002076 ORTHO05D002087 4.1e-17 92.8 117 52.1
Oeu045570.1 Olea europaea HOM05D002076 ORTHO05D002087 2.0e-16 90.5 114 49.1
CAN.G473.143 Capsicum annuum HOM05D002076 ORTHO05D002087 4.7e-13 79.3 114 45.6
Oeu035263.1 Olea europaea HOM05D002076 ORTHO05D002087 4.7e-13 79.3 114 47.4
A04p25800 Brassica napus HOM05D002076 ORTHO05D002087 6.1e-13 79.0 121 45.5
QL02p070438 Quercus lobata HOM05D002076 ORTHO05D002087 8.0e-13 78.6 114 47.4
TAR622G0696 Trochodendron aralioides HOM05D002076 ORTHO05D002087 8.0e-13 78.6 114 47.4
ClCG06G001840 Citrullus lanatus HOM05D002076 ORTHO05D002087 1.8e-12 77.4 114 45.6
BraA04t18083Z Brassica rapa HOM05D002076 ORTHO05D002087 2.3e-12 77.0 114 45.6
CiPaw.03G004200 Carya illinoinensis HOM05D002076 ORTHO05D002087 2.3e-12 77.0 114 45.6
DCAR_014486 Daucus carota HOM05D002076 ORTHO05D002087 2.3e-12 77.0 112 45.5
BcaC02g07798 Brassica carinata HOM05D002076 ORTHO05D002087 5.2e-12 75.9 114 44.7
CiPaw.05G104400 Carya illinoinensis HOM05D002076 ORTHO05D002087 5.2e-12 75.9 114 44.7
Lalb_Chr21g0316831 Lupinus albus HOM05D002076 ORTHO05D002087 5.2e-12 75.9 114 46.5
C04p63020 Brassica napus HOM05D002076 ORTHO05D002087 6.8e-12 75.5 114 44.7
BolC4t27779H Brassica oleracea HOM05D002076 ORTHO05D002087 6.8e-12 75.5 114 44.7
MD17G1010200 Malus domestica HOM05D002076 ORTHO05D002087 6.8e-12 75.5 114 44.7
CSS0047940 Camellia sinensis var. sinensis HOM05D002076 ORTHO05D002087 8.9e-12 75.1 114 43.0
FAN14G0388 Fragaria x ananassa HOM05D002076 ORTHO05D002087 8.9e-12 75.1 109 43.1
CANSAT64G1900 Cannabis sativa HOM05D002076 ORTHO05D002087 1.2e-11 74.7 115 46.1
MBI07_g24757_MAGBIO Magnolia biondii HOM05D002076 ORTHO05D002087 1.2e-11 74.7 114 43.9
VMungo1383G3008 Vigna mungo HOM05D002076 ORTHO05D002087 1.2e-11 74.7 114 46.5
Sabra16G0207300 Salix brachista HOM05D002076 ORTHO05D002087 1.5e-11 74.3 108 46.3
Haze_14918 Corylus avellana HOM05D002076 ORTHO05D002087 2.0e-11 73.9 114 45.6
unitig_88.g27785 Utricularia gibba HOM05D002076 ORTHO05D002087 2.6e-11 73.6 114 43.0
CsaV3_6G007890 Cucumis sativus L. HOM05D002076 ORTHO05D002087 3.4e-11 73.2 114 43.0
Nn4g22206 Nelumbo nucifera HOM05D002076 ORTHO05D002087 3.4e-11 73.2 114 42.1
MD09G1006200 Malus domestica HOM05D002076 ORTHO05D002087 4.4e-11 72.8 114 43.9
TPR.G21124 Trifolium pratense HOM05D002076 ORTHO05D002087 4.4e-11 72.8 114 46.5
C04p15620 Brassica napus HOM05D002076 ORTHO05D002087 5.7e-11 72.4 124 41.9
Ciclev10014551m.g Citrus clementina HOM05D002076 ORTHO05D002087 5.7e-11 72.4 117 45.3
CARHR127500 Cardamine hirsuta HOM05D002076 ORTHO05D002087 7.5e-11 72.0 114 43.0
Phvul.001G088100 Phaseolus vulgaris HOM05D002076 ORTHO05D002087 7.5e-11 72.0 114 45.6
Sed0013366 Sechium edule HOM05D002076 ORTHO05D002087 7.5e-11 72.0 114 43.0
Cfa007189 Carpinus fangiana HOM05D002076 ORTHO05D002087 9.8e-11 71.6 114 44.7
Ca_08110_v3 Cicer arietinum L. HOM05D002076 ORTHO05D002087 9.8e-11 71.6 114 45.6
Atru.chr6.2620 Acer truncatum HOM05D002076 ORTHO05D002087 1.3e-10 71.2 114 44.7
Sabra17G0056800 Salix brachista HOM05D002076 ORTHO05D002087 1.3e-10 71.2 106 45.3
BcaC02g11435 Brassica carinata HOM05D002076 ORTHO05D002087 1.7e-10 70.9 114 43.0
BolC4t23130H Brassica oleracea HOM05D002076 ORTHO05D002087 1.7e-10 70.9 114 43.0
CDE09G0493 Ceratophyllum demersum HOM05D002076 ORTHO05D002087 1.7e-10 70.9 115 40.0
AL4G29160 Arabidopsis lyrata HOM05D002076 ORTHO05D002087 2.2e-10 70.5 114 42.1
AT2G33490 Arabidopsis thaliana HOM05D002076 ORTHO05D002087 2.2e-10 70.5 114 42.1
Gohir.A05G335300 Gossypium hirsutum HOM05D002076 ORTHO05D002087 2.2e-10 70.5 114 43.0
Gohir.D04G074100 Gossypium hirsutum HOM05D002076 ORTHO05D002087 2.2e-10 70.5 114 43.0
Gorai.012G083500 Gossypium raimondii HOM05D002076 ORTHO05D002087 2.2e-10 70.5 114 43.0
PGR102G0663 Punica granatum HOM05D002076 ORTHO05D002087 2.2e-10 70.5 115 42.6
MELO3C022344.2 Cucumis melo HOM05D002076 ORTHO05D002087 2.8e-10 70.1 114 42.1
BcaB02g10568 Brassica carinata HOM05D002076 ORTHO05D002087 3.7e-10 69.7 114 41.2
Carub.0004s1512 Capsella rubella HOM05D002076 ORTHO05D002087 3.7e-10 69.7 114 41.2
CiPaw.04G002800 Carya illinoinensis HOM05D002076 ORTHO05D002087 3.7e-10 69.7 112 43.8
FAN05G2484 Fragaria x ananassa HOM05D002076 ORTHO05D002087 3.7e-10 69.7 109 42.2
Gohir.D10G080500 Gossypium hirsutum HOM05D002076 ORTHO05D002087 3.7e-10 69.7 114 43.0
Hma1.2p1_0525F.1_g172680 Hydrangea macrophylla HOM05D002076 ORTHO05D002087 3.7e-10 69.7 112 42.9
RcHm_v2.0_Chr2g0176201 Rosa chinensis HOM05D002076 ORTHO05D002087 4.9e-10 69.3 114 40.4
Manes.08G103700 Manihot esculenta HOM05D002076 ORTHO05D002087 6.3e-10 68.9 114 42.1
Gorai.011G087500 Gossypium raimondii HOM05D002076 ORTHO05D002087 8.3e-10 68.6 114 42.1
Potri.017G063000 Populus trichocarpa HOM05D002076 ORTHO05D002087 1.1e-09 68.2 108 43.5
TAR629G0780 Trochodendron aralioides HOM05D002076 ORTHO05D002087 1.1e-09 68.2 114 42.1
FvH4_6g54020 Fragaria vesca HOM05D002076 ORTHO05D002087 1.4e-09 67.8 109 41.3
Gohir.A10G070700 Gossypium hirsutum HOM05D002076 ORTHO05D002087 1.4e-09 67.8 114 42.1
Dinv25631 Davidia involucrata HOM05D002076 ORTHO05D002087 1.8e-09 67.4 114 40.4
TAR374G0763 Trochodendron aralioides HOM05D002076 ORTHO05D002087 1.8e-09 67.4 109 43.1
Glyma.19G097400 Glycine max HOM05D002076 ORTHO05D002087 2.4e-09 67.0 114 43.9
Medtr7g083240 Medicago truncatula HOM05D002076 ORTHO05D002087 2.4e-09 67.0 114 45.6
Dinv33303 Davidia involucrata HOM05D002076 ORTHO05D002087 3.2e-09 66.6 114 41.2
Duzib248G1486 Durio zibethinus HOM05D002076 ORTHO05D002087 3.2e-09 66.6 116 42.2
ATR0582G334 Amborella trichopoda HOM05D002076 ORTHO05D002087 4.1e-09 66.2 114 43.0
GSVIVG01033030001 Vitis vinifera HOM05D002076 ORTHO05D002087 4.1e-09 66.2 115 43.5
Cc07_g01100 Coffea canephora HOM05D002076 ORTHO05D002087 5.4e-09 65.9 93 45.2
Lalb_Chr22g0360141 Lupinus albus HOM05D002076 ORTHO05D002087 5.4e-09 65.9 114 43.0
ECA246G1694 Erigeron canadensis HOM05D002076 ORTHO05D002087 9.2e-09 65.1 114 41.2
GSVIVG01000947001 Vitis vinifera HOM05D002076 ORTHO05D002087 9.2e-09 65.1 114 38.6
Lj1g0010264 Lotus japonicus HOM05D002076 ORTHO05D002087 1.2e-08 64.7 115 42.6
Manes.11G079800 Manihot esculenta HOM05D002076 ORTHO05D002087 1.2e-08 64.7 112 43.8
Eucgr.B03540 Eucalyptus grandis HOM05D002076 ORTHO05D002087 1.6e-08 64.3 118 39.0
Lsat_1_v5_gn_2_94660 Lactuca sativa HOM05D002076 ORTHO05D002087 1.6e-08 64.3 115 38.3
Haze_12474 Corylus avellana HOM05D002076 ORTHO05D002087 2.0e-08 63.9 114 42.1
Potri.001G324800 Populus trichocarpa HOM05D002076 ORTHO05D002087 2.0e-08 63.9 108 42.6
SalBow2G2781 Salvia bowleyana HOM05D002076 ORTHO05D002087 2.0e-08 63.9 132 35.6
Thecc.04G042900 Theobroma cacao HOM05D002076 ORTHO05D002087 2.0e-08 63.9 114 41.2
COL.COLO4_13319 Corchorus olitorius HOM05D002076 ORTHO05D002087 2.7e-08 63.5 114 43.0
Gohir.A03G151000 Gossypium hirsutum HOM05D002076 ORTHO05D002087 2.7e-08 63.5 116 39.7
Gorai.005G195700 Gossypium raimondii HOM05D002076 ORTHO05D002087 2.7e-08 63.5 116 39.7
PSO017G4397 Papaver somniferum HOM05D002076 ORTHO05D002087 2.7e-08 63.5 114 39.5
PSO478G3609 Papaver somniferum HOM05D002076 ORTHO05D002087 2.7e-08 63.5 114 39.5
Duzib147G0639 Durio zibethinus HOM05D002076 ORTHO05D002087 3.5e-08 63.2 114 41.2
Lsat_1_v5_gn_0_11461 Lactuca sativa HOM05D002076 ORTHO05D002087 3.5e-08 63.2 115 41.7
Prupe.3G310800 Prunus persica HOM05D002076 ORTHO05D002087 3.5e-08 63.2 114 42.1
HPP92_021627 Vanilla planifolia HOM05D002076 ORTHO05D002087 3.5e-08 63.2 114 37.7
HanXRQChr17g0568781 Helianthus annuus HOM05D002076 ORTHO05D002087 4.5e-08 62.8 114 40.4
arahy.Tifrunner.gnm1.ann1.MI9KMH Arachis hypogaea HOM05D002076 ORTHO05D002087 5.9e-08 62.4 114 41.2
arahy.Tifrunner.gnm1.ann1.NWPU6Y Arachis hypogaea HOM05D002076 ORTHO05D002087 5.9e-08 62.4 114 41.2
Duzib187G1821 Durio zibethinus HOM05D002076 ORTHO05D002087 5.9e-08 62.4 114 38.6
HPP92_006985 Vanilla planifolia HOM05D002076 ORTHO05D002087 5.9e-08 62.4 175 31.4
Manes.04G090300 Manihot esculenta HOM05D002076 ORTHO05D002087 7.8e-08 62.0 109 44.0
Glyma.16G051600 Glycine max HOM05D002076 ORTHO05D002087 1.0e-07 61.6 102 44.1
Gohir.D02G174000 Gossypium hirsutum HOM05D002076 ORTHO05D002087 1.0e-07 61.6 116 39.7
HanXRQChr09g0256411 Helianthus annuus HOM05D002076 ORTHO05D002087 1.7e-07 60.8 115 39.1
EL10Ac6g13576 Beta vulgaris HOM05D002076 ORTHO05D002087 2.3e-07 60.5 114 41.2
BcaB06g28693 Brassica carinata HOM05D002076 ORTHO05D002087 2.3e-07 60.5 114 41.2
SalBow6G3550 Salvia bowleyana HOM05D002076 ORTHO05D002087 2.3e-07 60.5 60 58.3
Actinidia05872 Actinidia chinensis HOM05D002076 ORTHO05D002087 2.9e-07 60.1 112 42.9
Actinidia30607 Actinidia chinensis HOM05D002076 ORTHO05D002087 3.9e-07 59.7 118 37.3
Lalb_Chr04g0257111 Lupinus albus HOM05D002076 ORTHO05D002087 3.9e-07 59.7 118 38.1
PGR142G3486 Punica granatum HOM05D002076 ORTHO05D002087 3.9e-07 59.7 113 40.7
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 3.9e-07 59.7 71 53.5
ATR0706G182 Amborella trichopoda HOM05D002076 ORTHO05D002087 5.0e-07 59.3 114 39.5
Migut.K00990 Erythranthe guttata HOM05D002076 ORTHO05D002087 5.0e-07 59.3 114 37.7
PGSC0003DMG400029999 Solanum tuberosum HOM05D002076 ORTHO05D002087 5.0e-07 59.3 114 38.6
HanXRQChr17g0551581 Helianthus annuus HOM05D002076 ORTHO05D002087 8.6e-07 58.5 115 40.9
Nitab4.5_0003991g0010 Nicotiana tabacum HOM05D002076 ORTHO05D002087 8.6e-07 58.5 114 38.6
Actinidia36234 Actinidia chinensis HOM05D002076 ORTHO05D002087 1.1e-06 58.2 105 36.2
Lj3A1075G32 Lonicera japonica HOM05D002076 ORTHO05D002087 1.1e-06 58.2 118 38.1
Phvul.007G000600 Phaseolus vulgaris HOM05D002076 ORTHO05D002087 1.1e-06 58.2 115 38.3
Rhsim10G0003100 Rhododendron simsii HOM05D002076 ORTHO05D002087 1.1e-06 58.2 63 55.6
Solyc01g009820.4 Solanum lycopersicum HOM05D002076 ORTHO05D002087 1.1e-06 58.2 114 37.7
Sopen01g005350 Solanum pennellii HOM05D002076 ORTHO05D002087 1.1e-06 58.2 114 37.7
Atru.chr11.2399 Acer truncatum HOM05D002076 ORTHO05D002087 1.5e-06 57.8 115 40.9
HPP92_025289 Vanilla planifolia HOM05D002076 ORTHO05D002087 1.9e-06 57.4 115 38.3
A05p12060 Brassica napus HOM05D002076 ORTHO05D002087 2.5e-06 57.0 114 38.6
BraA05t20146Z Brassica rapa HOM05D002076 ORTHO05D002087 2.5e-06 57.0 114 38.6
Eucgr.I01619 Eucalyptus grandis HOM05D002076 ORTHO05D002087 2.5e-06 57.0 114 40.4
Nitab4.5_0001600g0140 Nicotiana tabacum HOM05D002076 ORTHO05D002087 2.5e-06 57.0 114 37.7
Peaxi162Scf00220g00091 Petunia axillaris HOM05D002076 ORTHO05D002087 2.5e-06 57.0 117 38.5
THA.LOC104823990 Tarenaya hassleriana HOM05D002076 ORTHO05D002087 3.3e-06 56.6 114 37.7
MSTRG.8038 Avicennia marina HOM05D002076 ORTHO05D002087 4.3e-06 56.2 114 36.8
MSTRG.9451 Avicennia marina HOM05D002076 ORTHO05D002087 4.3e-06 56.2 114 37.7
THA.LOC104825645 Tarenaya hassleriana HOM05D002076 ORTHO05D002087 4.3e-06 56.2 114 38.6
Carub.0005s0500 Capsella rubella HOM05D002076 ORTHO05D002087 5.6e-06 55.8 114 39.5
Psat3g208240 Pisum sativum HOM05D002076 ORTHO05D002087 5.6e-06 55.8 110 37.3
CSS0041667 Camellia sinensis var. sinensis HOM05D002076 ORTHO05D002087 7.3e-06 55.5 63 54.0
CSS0042506 Camellia sinensis var. sinensis HOM05D002076 ORTHO05D002087 7.3e-06 55.5 63 54.0
CARHR148000 Cardamine hirsuta HOM05D002076 ORTHO05D002087 7.3e-06 55.5 113 38.1
HanXRQChr14g0451281 Helianthus annuus HOM05D002076 ORTHO05D002087 7.3e-06 55.5 115 36.5
Rhsim12G0020900 Rhododendron simsii HOM05D002076 ORTHO05D002087 7.3e-06 55.5 63 54.0
CiPaw.06G107200 Carya illinoinensis HOM05D002076 ORTHO05D002087 9.5e-06 55.1 63 54.0
Sabra03G0121700 Salix brachista HOM05D002076 ORTHO05D002087 9.5e-06 55.1 116 36.2


User provided reference genes

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