Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 0.0e+00 1397.9 973 100.0
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.8e-270 936.4 982 74.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-216 757.7 956 70.5
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.4e-213 746.1 921 71.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.1e-211 741.1 987 64.7
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 9.2e-203 711.4 980 64.8
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.2e-202 711.1 927 62.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 5.6e-200 702.2 978 63.4
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 3.6e-199 699.5 980 63.1
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 4.7e-199 699.1 848 68.5
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.0e-198 696.0 925 65.7
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 7.0e-195 685.3 989 62.7
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.7e-193 680.6 972 64.4
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 3.9e-193 679.5 915 65.1
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.5e-184 650.2 1009 60.0
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 7.3e-184 648.7 909 66.3
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 3.6e-183 646.4 801 72.5
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 8.1e-183 645.2 906 61.0
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.6e-181 640.2 907 59.5
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 5.8e-181 639.0 931 64.2
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 5.8e-181 639.0 1003 60.3
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 7.5e-181 638.6 969 61.3
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 7.5e-181 638.6 980 59.8
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 3.7e-180 636.3 863 64.8
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 8.3e-180 635.2 917 61.3
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.9e-179 634.0 824 69.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.2e-178 631.3 830 61.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 3.0e-177 626.7 946 55.8
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 8.6e-177 625.2 835 66.0
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.9e-176 624.0 876 64.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.5e-176 623.6 1000 60.3
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.3e-176 623.2 1000 60.3
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.6e-175 620.9 918 62.1
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.8e-175 620.2 814 67.9
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 3.6e-175 619.8 814 69.4
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 8.1e-175 618.6 875 65.1
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.4e-174 617.8 915 64.2
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-174 617.8 821 67.5
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.0e-173 614.0 889 58.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 7.6e-173 612.1 892 54.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.8e-172 609.8 907 62.0
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 4.9e-172 609.4 821 66.1
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.4e-172 608.6 850 63.3
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.9e-171 607.4 806 70.2
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.4e-171 607.1 867 63.7
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.4e-171 607.1 816 68.4
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.2e-171 606.7 816 68.4
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.2e-171 606.7 972 57.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.2e-170 604.7 821 66.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.6e-170 604.4 912 62.4
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.1e-170 604.0 826 64.2
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.7e-170 603.6 822 64.8
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.3e-169 601.3 798 66.4
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.0e-169 600.1 823 67.1
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.0e-169 600.1 820 63.9
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.1e-168 598.2 820 67.4
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.9e-168 597.4 796 66.8
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.9e-168 597.4 819 61.2
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 9.6e-168 595.1 833 65.4
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.7e-167 592.8 846 57.4
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 6.2e-167 592.4 909 61.6
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 6.2e-167 592.4 821 66.1
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 6.2e-167 592.4 824 66.4
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.1e-167 592.0 975 58.5
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 8.1e-167 592.0 818 66.4
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 8.1e-167 592.0 913 58.8
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.1e-166 590.1 819 67.2
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.0e-165 587.4 813 61.0
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 2.0e-165 587.4 915 57.6
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.6e-165 587.0 855 62.0
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.9e-164 583.6 834 64.7
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.1e-163 581.6 820 65.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.4e-163 581.3 834 64.7
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.4e-163 581.3 890 55.5
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 2.1e-162 577.4 818 66.1
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.6e-162 576.2 821 63.8
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.0e-161 575.1 919 52.8
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.7e-161 574.3 817 63.4
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.0e-161 573.5 811 67.3
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 3.9e-161 573.2 817 65.0
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.3e-160 569.7 1012 58.0
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.3e-159 568.2 820 65.6
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.1e-159 567.4 811 64.4
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 4.8e-159 566.2 800 65.5
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 8.1e-159 565.5 815 65.2
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-158 564.7 811 64.0
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.4e-157 560.1 818 64.7
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 4.5e-157 559.7 812 62.7
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 9.9e-157 558.5 882 58.7
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 2.9e-156 557.0 812 64.9
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 3.8e-156 556.6 902 59.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 8.4e-156 555.4 818 63.9
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 8.4e-156 555.4 812 64.2
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.4e-155 553.9 811 63.4
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.2e-155 553.1 890 61.0
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 7.1e-155 552.4 815 64.5
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-154 551.6 823 61.5
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.5e-154 550.1 926 56.6
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 4.6e-154 549.7 821 61.1
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.8e-153 547.7 821 63.6
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 3.9e-153 546.6 819 63.5
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.1e-153 546.2 834 54.3
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.3e-151 541.6 993 50.9
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.8e-151 540.4 730 65.2
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 6.2e-151 539.3 817 63.3
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.1e-150 537.0 820 64.1
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 6.9e-150 535.8 812 63.4
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 6.9e-150 535.8 812 63.4
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.2e-149 535.0 815 58.7
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.0e-149 534.3 814 63.5
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.0e-149 534.3 814 63.5
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.7e-148 531.2 943 57.3
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.7e-148 531.2 803 59.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 4.9e-148 529.6 801 63.8
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.6e-146 524.6 838 56.3
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 6.0e-146 522.7 803 57.2
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 6.0e-146 522.7 803 57.2
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 3.0e-145 520.4 767 56.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.1e-145 519.6 829 60.4
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.1e-144 518.5 809 61.7
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.5e-144 518.1 812 61.2
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 4.3e-144 516.5 970 55.8
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 7.4e-144 515.8 735 64.2
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.2e-143 512.3 859 58.8
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.2e-140 504.2 815 56.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 8.4e-140 502.3 806 58.9
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-138 498.0 806 59.1
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 8.7e-137 492.3 820 55.0
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 3.3e-136 490.3 823 56.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.3e-136 490.0 804 57.6
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.3e-135 488.4 742 60.8
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 6.3e-135 486.1 729 56.4
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 3.1e-134 483.8 866 53.1
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 7.2e-131 472.6 803 59.8
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.0e-129 468.8 772 48.8
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-128 464.2 804 56.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.5e-128 464.2 786 57.3
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.5e-128 464.2 818 58.4
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.1e-126 457.2 817 51.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.3e-121 441.0 845 47.7
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 7.4e-120 436.0 653 75.2
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 7.4e-120 436.0 684 68.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.5e-117 428.3 715 62.5
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.3e-116 425.2 653 61.3
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 7.2e-115 419.5 888 50.2
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.1e-114 417.9 686 57.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.2e-111 407.9 917 46.2
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.7e-109 399.4 917 46.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 6.7e-105 386.3 942 34.8
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.6e-101 375.2 403 61.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.1e-98 364.8 848 51.4
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.8e-97 361.7 800 47.6
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.8e-97 359.4 601 60.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 4.1e-94 350.5 646 67.5
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.3e-87 326.6 323 66.3
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 7.3e-83 313.2 949 45.0
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 7.5e-80 303.1 646 56.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 3.6e-74 284.3 366 54.6
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 3.4e-72 277.7 316 56.3
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.9e-71 273.9 662 47.4
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 6.4e-71 273.5 377 53.8
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.8e-65 255.4 269 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.2e-64 252.7 605 55.5
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.7e-60 238.8 303 77.2
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-57 229.6 221 58.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.4e-46 192.6 222 49.1
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.4e-38 166.0 284 38.7
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.3e-28 132.1 168 46.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.5e-27 128.6 88 75.0
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.6e-26 125.9 119 55.5
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.8e-26 125.2 113 58.4
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 9.0e-17 93.6 69 66.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 3.4e-16 91.7 66 72.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 4.5e-16 91.3 136 73.5
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 6.3e-10 70.9 190 31.6
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 7.7e-08 63.9 54 55.6
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 8.5e-07 60.5 203 28.6
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.5e-06 57.8 154 29.2


User provided reference genes

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