Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 2.0e-180 635.6 312 100.0
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 2.7e-116 422.5 312 65.4
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 7.4e-114 414.5 312 65.4
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 3.1e-112 409.1 325 63.1
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 5.2e-107 391.7 314 62.4
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 7.4e-106 387.9 314 61.1
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 7.4e-106 387.9 314 61.1
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 9.7e-106 387.5 314 61.8
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 1.4e-104 383.6 314 60.5
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 3.1e-104 382.5 313 59.7
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 1.3e-102 377.1 317 58.4
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 6.7e-99 364.8 315 57.5
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 5.7e-98 361.7 321 56.4
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 2.4e-96 356.3 314 58.9
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 5.0e-94 348.6 314 57.3
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 2.7e-92 342.8 314 54.1
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 2.7e-92 342.8 320 54.7
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 6.1e-92 341.7 320 54.4
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 2.3e-91 339.7 322 52.2
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 1.5e-90 337.0 319 55.8
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 2.0e-90 336.7 316 53.5
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 5.7e-90 335.1 315 54.6
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 7.5e-90 334.7 319 55.5
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 9.8e-90 334.3 322 53.7
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 9.8e-90 334.3 316 53.2
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.3e-89 334.0 315 53.0
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 1.3e-89 334.0 320 53.1
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 3.7e-89 332.4 317 55.5
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 9.1e-88 327.8 314 54.5
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.7e-87 326.2 320 51.6
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 2.7e-87 326.2 317 54.3
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 2.7e-87 326.2 322 50.9
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 3.5e-87 325.9 367 47.7
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 2.9e-86 322.8 315 53.3
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 5.0e-86 322.0 314 52.5
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 8.5e-86 321.2 325 51.7
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 1.1e-85 320.9 322 50.6
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 2.5e-85 319.7 320 49.7
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 3.2e-85 319.3 319 54.9
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 4.2e-85 318.9 318 50.9
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 9.5e-85 317.8 317 50.2
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 1.2e-84 317.4 314 50.0
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 1.6e-84 317.0 312 50.3
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 1.6e-84 317.0 314 54.5
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 2.1e-84 316.6 318 56.0
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 6.8e-83 311.6 321 51.4
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 1.5e-82 310.5 320 49.7
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 1.5e-82 310.5 313 49.8
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 7.5e-82 308.1 314 51.3
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 9.8e-82 307.8 319 50.5
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 1.3e-81 307.4 313 49.5
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 4.9e-81 305.4 317 51.7
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 1.8e-80 303.5 323 50.2
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 3.1e-80 302.8 320 50.6
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 3.5e-79 299.3 319 50.5
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 7.8e-79 298.1 319 47.3
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 7.8e-79 298.1 314 49.7
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 1.0e-78 297.7 313 49.8
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 3.8e-78 295.8 320 49.4
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 5.0e-78 295.4 315 49.2
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 8.6e-78 294.7 319 48.0
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.1e-77 294.3 315 50.2
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 1.1e-77 294.3 318 47.8
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 5.6e-77 292.0 320 48.1
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 5.6e-77 292.0 320 47.5
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 1.6e-76 290.4 316 48.7
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 3.6e-76 289.3 316 47.5
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 3.6e-76 289.3 316 49.1
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 1.4e-75 287.3 315 48.9
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 3.0e-75 286.2 313 47.9
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 6.8e-75 285.0 312 48.1
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 5.7e-74 282.0 394 44.4
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 5.7e-74 282.0 318 47.5
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 3.7e-73 279.3 320 46.6
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 3.7e-73 279.3 319 46.4
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 6.4e-73 278.5 316 46.5
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 2.0e-71 273.5 313 46.0
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 2.7e-71 273.1 313 46.3
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 2.7e-71 273.1 325 45.5
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 3.5e-71 272.7 321 45.8
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 4.6e-71 272.3 320 46.2
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 7.8e-71 271.6 338 45.0
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 3.0e-70 269.6 313 46.6
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 1.9e-69 266.9 313 46.0
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 7.3e-69 265.0 438 39.5
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.9e-65 253.1 222 58.1
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 2.9e-65 253.1 282 48.2
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 8.3e-65 251.5 329 44.4
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 2.4e-64 250.0 332 43.1
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 3.2e-64 249.6 313 44.7
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 5.4e-64 248.8 321 42.4
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 1.2e-63 247.7 312 46.5
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 1.0e-62 244.6 313 43.5
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 1.7e-62 243.8 337 42.1
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 1.1e-61 241.1 314 43.9
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.1e-61 241.1 274 48.5
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.3e-59 233.4 257 49.0
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 3.1e-59 233.0 228 50.9
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 6.8e-59 231.9 287 44.3
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 1.5e-58 230.7 276 45.3
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 2.6e-58 229.9 235 48.9
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 7.5e-58 228.4 238 49.2
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 2.9e-57 226.5 269 45.7
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 4.1e-56 222.6 340 40.3
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 9.2e-56 221.5 333 39.6
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.7e-55 219.9 324 38.9
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 2.7e-55 219.9 258 46.9
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 7.8e-55 218.4 299 42.5
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 5.6e-53 212.2 290 44.8
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 4.7e-52 209.1 278 42.8
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 6.2e-52 208.8 321 39.3
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.4e-51 207.6 322 37.3
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 3.4e-50 203.0 251 43.0
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 5.4e-48 195.7 308 39.3
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 7.8e-47 191.8 324 38.3
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.3e-46 191.0 392 35.5
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 5.6e-45 185.7 313 35.8
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 2.9e-41 173.3 163 50.3
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 1.0e-38 164.9 314 35.0
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 3.9e-38 162.9 195 44.6
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 3.6e-36 156.4 256 36.3
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 2.9e-25 120.2 240 34.2
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 9.0e-19 98.6 55 85.5
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.6e-12 77.8 67 58.2
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 2.2e-12 77.4 47 72.3
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 3.4e-10 70.1 46 67.4
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 9.3e-08 62.0 49 57.1


User provided reference genes

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