Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 2.6e-250 868.2 432 100.0
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.0e-209 733.4 415 87.5
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 3.3e-205 718.4 415 86.7
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.5e-197 693.0 444 78.6
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 4.8e-196 688.0 414 82.4
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 2.2e-193 679.1 417 80.6
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 6.1e-191 671.0 418 80.6
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.6e-189 665.6 417 78.7
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 2.6e-189 665.6 413 78.7
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 4.4e-189 664.8 414 79.0
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 7.4e-189 664.1 415 78.8
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 2.8e-188 662.1 415 78.6
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 3.7e-188 661.8 421 79.1
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 8.2e-188 660.6 419 77.8
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 1.1e-187 660.2 418 78.2
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 5.3e-187 657.9 416 78.8
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 7.0e-187 657.5 417 77.9
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.6e-186 656.4 420 77.9
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 2.0e-186 656.0 418 79.2
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 3.5e-186 655.2 373 84.2
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 3.5e-186 655.2 420 78.1
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 4.5e-186 654.8 369 84.6
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 5.9e-186 654.4 416 78.1
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 1.0e-185 653.7 419 76.6
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 3.8e-185 651.7 416 78.1
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 5.0e-185 651.4 419 76.4
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 8.5e-185 650.6 428 76.4
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 1.9e-184 649.4 417 77.0
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 2.5e-184 649.0 365 86.0
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.5e-184 649.0 421 76.0
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 4.2e-184 648.3 417 77.9
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 5.5e-184 647.9 419 77.8
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 7.2e-184 647.5 417 77.2
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.2e-183 646.7 419 75.9
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.8e-182 642.9 414 76.8
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 2.3e-182 642.5 428 76.4
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 8.8e-182 640.6 415 76.6
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 8.8e-182 640.6 364 84.6
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 8.8e-182 640.6 419 76.4
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 3.3e-181 638.6 370 83.2
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 7.5e-181 637.5 419 76.8
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.3e-180 636.7 414 75.4
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.4e-179 633.3 419 74.9
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 2.4e-179 632.5 364 83.5
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 1.3e-177 626.7 418 75.1
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 2.9e-177 625.5 399 76.9
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 5.0e-177 624.8 414 75.8
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.5e-176 623.2 344 86.0
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 3.2e-176 622.1 417 75.5
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.2e-175 620.2 422 73.2
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 1.6e-175 619.8 417 75.1
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 4.7e-175 618.2 373 80.4
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 6.1e-175 617.8 386 78.8
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.0e-174 617.1 363 81.5
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.8e-174 616.3 356 83.1
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 2.3e-174 615.9 360 81.7
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 2.3e-174 615.9 403 74.2
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 2.0e-173 612.8 357 83.8
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 4.8e-172 608.2 363 81.3
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 6.3e-172 607.8 343 83.4
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 8.3e-172 607.4 372 78.2
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 5.4e-171 604.7 415 73.5
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 5.4e-171 604.7 330 87.9
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.6e-167 593.2 422 72.5
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 2.1e-167 592.8 367 78.2
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 4.7e-167 591.7 362 79.3
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 8.0e-167 590.9 365 78.9
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 1.4e-166 590.1 362 79.0
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 1.4e-166 590.1 362 79.0
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.8e-166 589.7 361 79.2
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 2.3e-166 589.3 361 78.7
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 3.0e-166 589.0 361 78.9
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 3.0e-166 589.0 361 78.9
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 1.5e-165 586.6 359 78.6
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 2.0e-165 586.3 369 76.2
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 7.5e-165 584.3 361 78.1
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 1.7e-164 583.2 369 74.5
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 2.2e-164 582.8 420 69.5
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 2.2e-164 582.8 373 79.1
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.1e-163 578.9 399 72.4
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.2e-162 577.0 352 78.4
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 4.5e-162 575.1 365 78.6
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 5.0e-161 571.6 370 74.9
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 6.6e-161 571.2 343 79.9
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 1.5e-160 570.1 369 73.7
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 3.3e-160 568.9 415 70.6
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 2.3e-158 562.8 324 82.1
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.3e-156 557.0 406 69.2
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 6.4e-156 554.7 320 82.2
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 1.9e-155 553.1 402 71.6
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 2.4e-155 552.7 356 74.4
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 4.1e-155 552.0 361 75.3
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.5e-152 543.5 369 73.2
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 3.3e-152 542.3 299 87.3
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.6e-151 540.0 377 70.6
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 2.8e-151 539.3 379 74.1
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 8.0e-151 537.7 361 71.7
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 5.8e-149 531.6 364 71.4
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 3.2e-147 525.8 399 69.7
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 7.0e-147 524.6 365 71.0
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 2.1e-146 523.1 345 78.8
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 7.3e-144 514.6 436 63.8
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 9.9e-141 504.2 342 70.8
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 5.1e-137 491.9 270 88.1
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 4.3e-136 488.8 417 62.6
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.7e-129 466.8 341 66.6
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 3.6e-127 459.1 302 78.1
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.2e-125 454.1 254 85.0
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 1.4e-123 447.2 389 58.4
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 7.8e-122 441.4 340 61.5
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.9e-104 383.6 213 85.9
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 6.7e-97 358.6 203 83.7
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 5.5e-91 339.0 256 68.4
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 4.3e-88 329.3 210 78.6
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 2.8e-79 300.1 204 69.6
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.6e-66 257.7 274 48.9
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 8.0e-50 202.2 430 35.6
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 4.4e-48 196.4 123 83.7
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.5e-43 181.4 117 71.8
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 2.5e-43 180.6 246 42.7
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.4e-38 164.1 101 74.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 3.1e-33 147.1 85 77.6
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 3.9e-28 130.2 74 82.4
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 1.2e-26 125.2 165 43.6
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 2.0e-24 117.9 74 71.6
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.5e-19 101.7 124 48.4
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.3e-19 100.5 124 47.6
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.2e-17 93.2 74 67.6
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.2e-14 83.6 44 81.8
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.7e-13 80.9 110 49.1
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 1.1e-11 75.5 100 41.0
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 5.6e-11 73.2 93 46.2
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 2.9e-07 60.8 58 55.2
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.4e-06 58.5 48 54.2


User provided reference genes

Program Settings