Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 4.9e-138 494.6 271 100.0
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.4e-44 184.1 288 49.0
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.2e-43 181.0 281 46.6
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 9.5e-33 144.8 290 38.6
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.7e-32 142.5 290 39.0
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 8.1e-32 141.7 285 38.2
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.2e-30 137.9 290 40.0
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 5.8e-30 135.6 291 35.7
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 9.9e-30 134.8 293 38.6
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.2e-29 133.7 284 37.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 4.9e-29 132.5 282 37.9
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.1e-28 131.3 270 40.4
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.4e-28 130.2 288 35.8
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.4e-28 130.2 269 36.1
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 2.4e-28 130.2 286 36.7
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 4.1e-28 129.4 289 36.7
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.2e-27 127.9 263 36.9
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 1.2e-27 127.9 185 48.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 3.5e-27 126.3 271 36.2
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 6.0e-27 125.6 289 35.6
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 6.0e-27 125.6 290 35.2
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 6.0e-27 125.6 295 37.6
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 7.8e-27 125.2 276 37.3
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.3e-26 124.4 288 36.1
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.3e-26 124.4 282 35.8
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.9e-25 120.6 285 35.8
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 4.3e-25 119.4 276 35.9
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 4.3e-25 119.4 275 35.6
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 7.3e-25 118.6 259 34.7
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.2e-24 117.9 292 36.0
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.6e-24 117.5 286 33.2
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.1e-24 117.1 279 36.2
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.8e-24 116.7 289 34.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.8e-24 116.7 273 36.3
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.6e-24 116.3 300 36.3
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 4.7e-24 115.9 282 32.3
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 8.1e-24 115.2 299 33.8
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.1e-23 114.8 316 31.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.8e-23 114.0 270 34.1
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 2.4e-23 113.6 276 35.9
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.1e-23 113.2 276 33.7
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 4.0e-23 112.8 284 33.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 8.9e-23 111.7 289 33.9
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 8.9e-23 111.7 275 34.9
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 1.2e-22 111.3 270 34.4
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.2e-22 111.3 273 34.8
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.2e-22 111.3 263 33.5
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.5e-22 110.9 281 33.5
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 2.0e-22 110.5 273 35.2
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 2.0e-22 110.5 273 35.2
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.0e-22 110.5 259 35.1
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 4.4e-22 109.4 274 33.9
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.4e-22 109.4 267 31.1
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 5.8e-22 109.0 272 34.6
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 5.8e-22 109.0 272 34.6
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 7.6e-22 108.6 283 32.5
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 9.9e-22 108.2 268 34.7
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 9.9e-22 108.2 265 30.9
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.7e-21 107.5 276 33.0
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.7e-21 107.5 264 35.2
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.2e-21 107.1 273 33.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.2e-21 107.1 262 34.0
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.8e-21 106.3 284 30.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.9e-21 105.9 287 33.1
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 4.9e-21 105.9 261 34.1
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 6.4e-21 105.5 278 32.7
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.1e-20 104.8 275 33.5
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.1e-20 104.8 342 31.6
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.9e-20 104.0 342 31.9
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 2.4e-20 103.6 291 34.7
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.4e-20 103.6 270 33.3
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 3.2e-20 103.2 266 32.7
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.2e-20 103.2 288 33.3
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 4.2e-20 102.8 291 34.4
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 9.2e-20 101.7 275 32.4
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 9.2e-20 101.7 281 32.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.2e-19 101.3 300 33.3
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.2e-19 101.3 260 34.6
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 1.2e-19 101.3 277 35.7
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.6e-19 100.9 293 34.8
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 4.6e-19 99.4 299 34.4
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 6.0e-19 99.0 272 33.5
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 6.0e-19 99.0 277 32.5
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 7.8e-19 98.6 290 32.8
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 1.0e-18 98.2 292 34.9
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.0e-18 98.2 269 30.9
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.0e-18 98.2 279 31.2
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.7e-18 97.4 280 31.4
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.3e-18 97.1 271 33.9
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 3.0e-18 96.7 277 31.4
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 3.0e-18 96.7 280 31.1
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.0e-18 96.7 271 32.5
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.9e-18 96.3 287 32.4
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 5.1e-18 95.9 282 32.6
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 6.6e-18 95.5 292 33.9
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 8.7e-18 95.1 272 33.5
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.1e-17 94.7 277 30.3
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 1.5e-17 94.4 276 33.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.9e-17 94.0 289 34.3
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.9e-17 94.0 282 34.4
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 5.6e-17 92.4 276 32.6
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 7.3e-17 92.0 298 31.9
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.6e-16 90.9 328 28.7
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 2.4e-15 87.0 272 29.8
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.4e-15 87.0 280 30.4
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.1e-15 86.7 298 31.9
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 4.0e-15 86.3 271 32.1
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 6.9e-15 85.5 314 30.9
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.5e-14 84.3 302 32.5
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 2.0e-14 84.0 218 35.3
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 2.6e-14 83.6 297 32.0
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 3.4e-14 83.2 277 30.7
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 5.8e-14 82.4 280 31.1
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 2.2e-13 80.5 126 39.7
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.2e-13 80.5 237 30.4
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.2e-13 80.5 173 35.3
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.2e-13 80.5 276 28.3
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.9e-13 80.1 292 28.1
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 3.8e-13 79.7 263 31.2
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 3.8e-13 79.7 268 30.6
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 3.8e-13 79.7 174 36.2
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.9e-13 79.3 263 32.7
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 201 33.8
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.4e-12 77.8 169 32.5
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.9e-12 77.4 273 29.3
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 1.9e-12 77.4 299 32.1
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 1.9e-12 77.4 211 30.8
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.9e-12 77.4 268 31.3
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 4.2e-12 76.3 271 30.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 4.2e-12 76.3 271 29.2
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 7.1e-12 75.5 164 32.3
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 7.1e-12 75.5 162 37.0
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 7.1e-12 75.5 318 29.9
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.2e-11 74.7 312 29.5
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.2e-11 74.7 272 28.7
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.6e-11 74.3 305 30.2
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.1e-11 73.9 303 32.3
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.1e-11 73.9 289 30.4
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 4.6e-11 72.8 177 32.2
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.8e-11 72.0 269 29.7
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.8e-11 72.0 302 32.1
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.3e-10 71.2 271 30.3
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.3e-10 71.2 276 27.5
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.7e-10 70.9 279 30.8
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 2.3e-10 70.5 297 27.9
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 5.1e-10 69.3 268 29.9
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-09 68.2 268 28.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.5e-09 67.8 267 28.1
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.5e-09 67.8 210 30.0
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.5e-09 67.0 271 30.3
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 4.3e-09 66.2 270 28.9
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 4.3e-09 66.2 304 28.6
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 9.6e-09 65.1 304 27.6
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.3e-08 64.7 269 29.0
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 1.3e-08 64.7 239 30.5
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.3e-08 64.7 268 29.1
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.3e-08 64.7 273 30.0
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.1e-08 63.9 197 33.5
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.1e-08 63.9 262 27.5
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 6.2e-08 62.4 269 28.6
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 8.1e-08 62.0 282 28.0
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 8.1e-08 62.0 166 33.7
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 1.1e-07 61.6 286 28.0
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-07 61.6 290 27.2
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 1.1e-07 61.6 218 31.2
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-07 61.2 209 32.5
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 1.8e-07 60.8 262 30.2
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 2.4e-07 60.5 297 27.3
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 3.1e-07 60.1 328 25.3
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 5.3e-07 59.3 176 33.5
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 6.9e-07 58.9 305 24.9
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 6.9e-07 58.9 273 30.8
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 6.9e-07 58.9 329 27.7
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 4.5e-06 56.2 300 25.0
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 5.8e-06 55.8 262 27.5


User provided reference genes

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