Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 1.8e-139 499.2 250 100.0
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 5.8e-61 238.4 204 66.7
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 1.7e-39 167.2 205 54.1
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 5.5e-35 152.1 208 48.1
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 6.1e-34 148.7 206 48.1
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 6.7e-33 145.2 208 51.9
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 6.7e-33 145.2 208 51.9
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 2.5e-27 126.7 204 44.1
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 7.5e-24 115.2 204 43.1
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.8e-22 110.5 206 41.3
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 3.1e-22 109.8 204 42.2
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 1.0e-20 104.8 210 40.0
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.9e-20 103.2 192 40.1
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 2.9e-20 103.2 192 40.1
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 3.8e-20 102.8 200 41.5
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.0e-20 102.4 209 37.3
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.5e-20 101.7 196 39.3
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.1e-19 101.3 199 36.7
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.5e-19 100.1 201 39.3
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.2e-19 99.4 201 37.8
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 5.5e-19 99.0 206 39.3
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.5e-19 99.0 196 39.3
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.2e-18 97.8 196 38.8
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-18 97.8 196 38.8
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.6e-18 97.4 196 38.8
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.6e-18 96.3 196 35.7
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 4.7e-18 95.9 192 38.5
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 4.7e-18 95.9 235 35.3
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.1e-18 95.5 195 36.4
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.0e-18 95.1 195 36.4
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-17 94.7 195 35.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.0e-17 94.7 196 37.8
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-17 94.4 196 36.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-17 94.4 195 35.9
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.4e-17 94.4 190 37.9
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-17 94.0 195 36.4
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.8e-17 94.0 203 36.5
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 1.8e-17 94.0 155 41.9
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 1.8e-17 94.0 197 39.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.8e-17 94.0 195 38.5
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-17 93.2 195 35.4
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 4.0e-17 92.8 203 36.9
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.8e-17 92.0 208 36.5
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 6.8e-17 92.0 192 37.5
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 6.8e-17 92.0 206 37.9
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.5e-16 90.9 188 36.2
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 3.4e-16 89.7 208 36.5
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 4.4e-16 89.4 200 35.0
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.4e-16 89.4 195 36.9
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 7.5e-16 88.6 161 39.8
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 7.5e-16 88.6 195 34.9
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 7.5e-16 88.6 202 36.6
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 7.5e-16 88.6 175 37.7
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.5e-16 88.6 183 35.5
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-15 87.4 210 36.2
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.7e-15 87.4 192 40.1
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.7e-15 87.4 205 37.6
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.8e-15 86.7 213 36.6
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 3.7e-15 86.3 193 36.8
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-15 85.9 190 36.3
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 6.3e-15 85.5 170 37.1
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 6.3e-15 85.5 189 40.2
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 8.3e-15 85.1 191 35.6
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.4e-14 84.3 162 40.1
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.4e-14 84.3 199 36.7
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.8e-14 84.0 203 34.0
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.4e-14 83.6 187 36.9
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 2.4e-14 83.6 194 35.1
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 3.1e-14 83.2 153 38.6
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 3.1e-14 83.2 191 36.6
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 4.1e-14 82.8 201 34.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.1e-14 82.8 185 33.0
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 4.1e-14 82.8 161 36.0
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.4e-14 82.4 204 35.3
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.2e-13 81.3 196 35.7
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.2e-13 81.3 202 33.2
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.2e-13 81.3 193 34.2
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-13 80.9 192 31.8
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 1.6e-13 80.9 180 36.1
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.0e-13 80.5 205 35.6
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.0e-13 80.5 195 30.3
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 2.7e-13 80.1 160 33.1
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.5e-13 79.7 196 36.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.5e-13 79.7 176 34.7
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 5.9e-13 79.0 192 32.3
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 5.9e-13 79.0 192 32.3
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.0e-12 78.2 188 36.2
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 1.7e-12 77.4 196 36.2
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.7e-12 77.4 200 35.0
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.3e-12 77.0 195 35.9
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.3e-12 77.0 192 34.9
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 2.3e-12 77.0 211 29.9
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 2.9e-12 76.6 202 36.6
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 5.0e-12 75.9 196 34.7
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 5.0e-12 75.9 195 32.3
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 6.5e-12 75.5 191 31.4
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 8.6e-12 75.1 188 37.8
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 3.2e-11 73.2 198 33.8
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 3.2e-11 73.2 187 34.2
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 9.5e-11 71.6 154 35.7
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.5e-11 71.6 187 35.3
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.6e-10 70.9 201 33.8
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 2.1e-10 70.5 189 34.4
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.8e-10 70.1 191 30.9
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 4.7e-10 69.3 191 30.9
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.7e-10 69.3 144 35.4
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.7e-10 69.3 144 35.4
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.7e-10 69.3 207 30.0
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.0e-09 66.6 193 31.1
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 4.0e-09 66.2 233 30.5
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.2e-09 65.9 192 28.6
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 5.2e-09 65.9 194 33.5
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.5e-08 64.3 197 28.9
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 2.6e-08 63.5 191 29.3
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 3.4e-08 63.2 102 43.1
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 7.5e-08 62.0 193 30.1
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-07 61.2 191 29.3
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-07 61.2 191 29.3
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.7e-07 60.8 142 35.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-07 60.5 171 31.6
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.2e-07 60.5 190 31.1
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 2.8e-07 60.1 187 33.7
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 2.8e-07 60.1 94 44.7
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 3.7e-07 59.7 185 31.4
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 4.9e-07 59.3 215 28.4
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 4.9e-07 59.3 215 28.4
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 4.9e-07 59.3 146 30.8
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 6.3e-07 58.9 180 31.7
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 8.3e-07 58.5 200 27.0
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 8.3e-07 58.5 152 32.2
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.4e-06 57.8 182 27.5
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-06 57.8 208 28.4
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 1.4e-06 57.8 117 36.8
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-06 57.0 215 27.9
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 2.4e-06 57.0 191 32.5
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 2.4e-06 57.0 200 33.0


User provided reference genes

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