Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.0e-99 365.2 181 100.0
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 5.3e-96 354.4 181 95.6
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 7.1e-93 344.0 179 92.7
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 6.0e-92 340.9 178 93.3
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 6.9e-88 327.4 181 88.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 9.4e-85 317.0 181 84.5
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-84 316.6 179 84.4
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.6e-84 316.2 181 84.5
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.1e-84 315.8 179 85.5
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 6.1e-84 314.3 179 84.9
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.4e-83 313.2 181 84.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.4e-83 313.2 181 83.4
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.8e-83 312.8 181 84.5
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.9e-83 311.6 179 84.9
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 3.9e-83 311.6 179 83.8
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.9e-83 311.6 179 84.9
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 84.0
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.1e-82 310.1 179 83.8
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.1e-82 310.1 179 84.4
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.5e-82 309.7 179 83.2
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 83.4
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 2.0e-82 309.3 179 83.8
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.0e-82 309.3 181 82.9
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 7.4e-82 307.4 168 88.7
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 9.7e-82 307.0 179 82.7
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 9.7e-82 307.0 181 83.4
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 9.7e-82 307.0 168 89.9
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.3e-81 306.6 181 82.3
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.3e-81 306.6 179 82.1
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.2e-81 305.8 181 81.2
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 3.7e-81 305.1 176 84.1
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 4.8e-81 304.7 176 84.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 4.8e-81 304.7 176 84.1
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 6.3e-81 304.3 176 83.5
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 6.3e-81 304.3 176 82.4
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 6.3e-81 304.3 181 80.7
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 6.3e-81 304.3 179 82.7
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.2e-81 303.9 181 80.1
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.1e-80 303.5 179 82.7
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.4e-80 303.1 179 81.6
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.4e-80 303.1 179 81.6
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 80.7
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 80.7
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.1e-80 302.0 179 80.4
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.1e-80 302.0 179 81.6
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 80.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.1e-80 302.0 176 83.5
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 3.1e-80 302.0 182 79.7
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 4.1e-80 301.6 168 87.5
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 4.1e-80 301.6 181 80.1
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 80.1
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 6.9e-80 300.8 179 80.4
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 9.1e-80 300.4 181 79.0
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 9.1e-80 300.4 181 78.5
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 9.1e-80 300.4 179 80.4
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.2e-79 300.1 181 79.6
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.5e-79 299.7 181 79.0
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.5e-79 299.7 181 79.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.5e-79 299.7 179 82.7
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 77.9
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.6e-79 298.9 183 80.3
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 2.6e-79 298.9 181 79.0
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.4e-79 298.5 181 79.6
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.4e-79 298.5 181 79.6
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 5.9e-79 297.7 176 79.5
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 5.9e-79 297.7 170 85.9
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 2.2e-78 295.8 181 78.5
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.2e-78 295.8 179 80.4
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.2e-78 295.8 181 79.6
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.2e-78 295.8 181 79.6
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.9e-78 295.4 177 79.7
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 3.8e-78 295.0 176 80.1
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-77 293.5 182 78.0
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 79.7
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 79.7
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 79.7
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.9e-77 292.7 166 86.7
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 3.2e-77 292.0 180 78.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.2e-77 291.6 181 79.0
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 5.5e-77 291.2 177 79.1
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 7.2e-77 290.8 180 78.3
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 7.2e-77 290.8 177 81.9
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 9.4e-77 290.4 182 77.5
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.6e-76 288.5 166 83.7
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.7e-76 288.1 181 79.0
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 4.7e-76 288.1 175 80.6
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 6.1e-76 287.7 178 79.2
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 6.1e-76 287.7 179 81.0
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.0e-75 287.0 172 81.4
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.0e-75 287.0 172 81.4
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.8e-75 286.2 179 77.1
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.8e-75 286.2 179 77.1
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.3e-75 285.8 169 82.2
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 3.0e-75 285.4 174 78.2
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.1e-75 284.6 181 77.3
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 5.1e-75 284.6 180 77.8
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 5.1e-75 284.6 201 72.1
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.1e-74 283.5 180 77.8
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-74 281.6 181 76.2
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.4e-74 281.6 178 78.1
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 4.4e-74 281.6 168 81.5
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 7.4e-74 280.8 168 80.4
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 7.4e-74 280.8 183 77.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 7.4e-74 280.8 183 77.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.7e-74 280.4 175 79.4
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 9.7e-74 280.4 180 77.2
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 9.7e-74 280.4 178 77.0
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.2e-73 279.3 170 78.8
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 3.7e-73 278.5 169 79.9
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 4.8e-73 278.1 180 76.7
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.3e-73 277.7 170 80.0
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 8.2e-73 277.3 170 78.2
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.4e-72 276.6 178 76.4
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.2e-71 273.5 181 74.6
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 4.5e-71 271.6 200 69.5
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.0e-70 270.4 178 75.8
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.3e-70 270.0 168 79.8
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 2.2e-70 269.2 168 79.8
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 6.5e-70 267.7 181 75.7
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.2e-69 265.4 181 73.5
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.2e-68 263.5 180 73.9
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.6e-68 263.1 178 74.2
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.7e-68 261.5 159 80.5
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.9e-67 258.5 184 72.3
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 4.4e-66 255.0 179 70.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 7.4e-66 254.2 178 68.5
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 7.7e-63 244.2 165 69.7
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.0e-62 243.8 148 81.8
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 6.5e-62 241.1 150 80.0
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 6.5e-62 241.1 258 53.1
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 4.7e-60 235.0 177 64.4
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.4e-59 233.4 169 64.5
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.3e-58 228.8 181 66.9
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 4.5e-55 218.4 166 62.7
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.7e-49 199.9 168 58.9
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 4.1e-48 195.3 128 75.0
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.7e-41 173.3 172 56.4
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 2.9e-38 162.5 102 80.4
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.0e-35 152.1 133 65.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.7e-33 145.6 116 67.2
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 8.6e-30 134.4 79 82.3
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.2e-28 130.6 170 40.0
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.6e-28 130.2 179 39.1
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.7e-25 120.2 67 80.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.9e-24 116.7 75 76.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.9e-24 116.7 75 76.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 3.9e-22 109.0 62 85.5
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.2e-20 104.0 57 82.5
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 6.8e-19 98.2 165 36.4
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 6.8e-19 98.2 100 54.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.3e-17 94.0 54 83.3
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 1.3e-17 94.0 209 37.3
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 2.9e-17 92.8 84 57.1
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 4.1e-16 89.0 165 32.1
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 4.0e-11 72.4 90 46.7
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 5.8e-10 68.6 45 71.1
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 9.9e-10 67.8 90 44.4
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 2.9e-09 66.2 38 78.9
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 2.9e-09 66.2 38 78.9
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-08 64.3 38 84.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 2.4e-08 63.2 88 45.5
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.2e-08 62.4 37 81.1
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 2.1e-07 60.1 43 69.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 7.8e-07 58.2 30 83.3
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.7e-06 57.0 63 50.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 2.3e-06 56.6 50 60.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 2.3e-06 56.6 42 66.7


User provided reference genes

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