Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 7.7e-228 793.5 410 100.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.9e-187 658.3 414 82.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 6.6e-187 657.5 414 82.1
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 5.6e-186 654.4 413 82.6
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.0e-183 646.0 410 81.7
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.0e-183 646.0 413 80.9
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 7.6e-183 644.0 411 81.5
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.7e-182 642.9 412 81.6
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.1e-181 640.2 411 80.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-181 640.2 413 80.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.9e-181 639.4 409 80.0
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 3.2e-181 638.6 411 82.2
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 4.2e-181 638.3 411 82.0
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 7.1e-181 637.5 413 79.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.1e-180 636.0 406 82.5
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.6e-180 634.8 413 79.7
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 4.6e-180 634.8 413 79.4
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 6.0e-180 634.4 413 80.1
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.8e-180 634.0 413 79.7
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.0e-179 633.6 408 78.9
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.0e-179 633.6 413 80.1
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.3e-179 633.3 412 79.6
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.7e-179 632.9 410 79.8
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.9e-179 631.7 410 79.8
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.5e-178 629.8 414 79.5
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.9e-178 629.4 412 79.4
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.5e-178 629.0 412 79.1
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 5.6e-178 627.9 416 79.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.6e-178 627.9 422 77.5
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.8e-177 624.8 416 78.6
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 6.2e-177 624.4 407 78.6
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 8.1e-177 624.0 412 78.6
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.1e-176 623.6 420 78.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-176 623.2 410 79.3
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 5.3e-176 621.3 415 77.6
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 6.9e-176 620.9 412 78.9
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.9e-176 620.9 412 77.9
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 9.0e-176 620.5 414 78.7
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.2e-175 620.2 412 77.4
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.5e-175 619.8 410 79.0
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.0e-175 619.4 432 76.2
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.6e-175 619.0 413 78.5
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 4.4e-175 618.2 417 76.7
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.6e-175 617.5 412 76.9
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 4.9e-174 614.8 412 76.7
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.1e-173 613.6 414 77.3
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.4e-173 613.2 413 76.5
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.9e-173 612.8 411 77.1
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.9e-173 612.8 411 77.1
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.4e-173 612.5 410 75.4
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.4e-173 612.5 410 75.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.2e-173 612.1 416 75.7
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.2e-173 612.1 413 76.3
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 3.2e-173 612.1 415 77.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 4.2e-173 611.7 415 75.9
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 4.2e-173 611.7 413 77.2
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 7.1e-173 610.9 415 77.8
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 7.1e-173 610.9 412 76.5
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 7.1e-173 610.9 413 76.8
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 9.3e-173 610.5 412 78.2
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.2e-172 610.1 410 75.9
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.6e-172 609.8 420 75.7
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 3.5e-172 608.6 412 75.5
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.0e-172 607.8 413 75.8
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 7.8e-172 607.4 426 75.1
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.3e-171 605.9 413 76.8
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 3.0e-171 605.5 412 75.0
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.1e-171 604.7 410 77.6
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 6.6e-171 604.4 411 75.2
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.5e-170 603.2 410 77.6
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.9e-170 602.8 432 74.8
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.3e-170 602.1 424 75.2
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.3e-170 601.7 412 74.8
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 4.3e-170 601.7 415 74.7
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 5.6e-170 601.3 412 74.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 9.6e-170 600.5 419 74.0
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.3e-169 600.1 412 74.0
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.6e-169 599.7 424 75.0
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.1e-169 599.4 410 76.6
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.6e-169 598.6 411 77.6
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 4.8e-169 598.2 410 75.6
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.4e-168 596.7 413 76.0
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 9.0e-168 594.0 421 73.6
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.2e-167 593.6 444 71.8
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 2.0e-167 592.8 415 76.9
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.6e-167 592.4 450 71.8
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.5e-167 591.7 425 71.8
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.5e-167 591.7 444 71.4
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 5.8e-167 591.3 412 73.5
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 9.9e-167 590.5 415 74.2
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.4e-165 585.9 410 72.9
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-164 583.6 410 73.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.6e-164 583.2 415 73.3
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 2.1e-164 582.8 413 72.9
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 6.0e-164 581.3 410 72.2
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.8e-163 579.7 418 73.2
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 3.1e-160 568.9 360 81.1
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 6.9e-160 567.8 390 74.4
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.1e-156 556.2 339 83.2
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.5e-154 550.1 381 75.3
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.5e-154 550.1 381 75.3
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 4.3e-154 548.5 416 69.2
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.0e-151 539.7 348 76.7
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.1e-148 528.1 414 69.8
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.0e-147 527.3 479 63.0
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.0e-147 527.3 479 63.0
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 9.7e-146 520.8 352 77.0
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.5e-143 513.5 356 76.1
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.7e-142 510.0 318 80.8
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 9.4e-141 504.2 418 65.1
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 5.3e-136 488.4 413 65.1
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.2e-135 487.3 417 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 9.4e-133 477.6 425 59.3
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.7e-126 456.8 428 61.7
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 5.3e-120 435.3 404 60.6
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 4.0e-115 419.1 374 59.1
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.2e-113 413.3 274 78.1
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.8e-107 393.7 324 68.2
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.5e-103 379.0 336 61.6
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.5e-101 374.0 360 60.8
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.6e-87 325.9 416 45.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.3e-86 324.3 317 55.8
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 5.1e-78 295.8 420 41.4
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.2e-76 291.2 259 61.4
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.4e-72 277.7 466 39.9
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.0e-70 271.6 469 37.1
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.3e-62 244.6 328 45.1
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.8e-57 226.5 130 81.5
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.9e-56 224.2 318 42.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-55 220.7 130 82.3
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 9.0e-51 205.3 344 37.5
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 3.2e-48 196.8 338 35.5
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.6e-45 185.3 104 83.7
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.8e-44 183.7 104 82.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 4.2e-40 169.9 112 75.0
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.0e-38 165.2 132 62.9
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.3e-33 148.3 94 76.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.7e-31 140.6 121 61.2
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.9e-26 122.9 129 54.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.4e-24 118.2 65 89.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-22 111.3 58 82.8
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.4e-19 100.9 130 46.9
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.0e-17 95.5 69 66.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.9e-17 94.0 104 50.0
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 5.0e-17 93.2 96 55.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.2e-15 88.6 101 46.5
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 4.7e-15 86.7 65 67.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 4.4e-13 80.1 56 76.8
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.3e-12 78.6 48 77.1
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.8e-12 77.4 54 70.4
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.1e-11 75.5 52 73.1
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 5.0e-09 66.6 36 86.1
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 5.0e-09 66.6 36 86.1
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 5.0e-09 66.6 36 86.1
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 6.5e-09 66.2 50 60.0
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 2.5e-08 64.3 62 61.3
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.2e-07 62.0 36 86.1
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-07 61.2 38 76.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 3.6e-07 60.5 39 69.2
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 1.0e-06 58.9 128 37.5
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 1.4e-06 58.5 120 28.3
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 58.2 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 58.2 120 28.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-06 57.8 120 28.3
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 2.3e-06 57.8 120 28.3
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 4.0e-06 57.0 33 75.8
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 57.0 120 28.3


User provided reference genes

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