Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 0.0e+00 2913.6 1583 100.0
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 0.0e+00 1709.1 1743 60.5
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 1.7e-283 980.3 1749 43.0
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 9.1e-192 675.6 1822 35.2
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.9e-150 537.7 1766 33.7
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.8e-147 528.5 1629 34.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 2.3e-147 528.1 1672 33.1
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.4e-136 492.3 1652 32.6
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.3e-121 442.6 1992 30.2
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 4.2e-120 437.6 1621 31.5
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 9.3e-120 436.4 1755 30.8
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.6e-119 434.1 1801 30.5
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.1e-117 429.5 1690 30.5
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.8e-116 424.9 1987 29.8
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.4e-112 412.5 1989 29.1
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.3e-105 389.4 1731 31.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 2.2e-105 388.7 1935 28.1
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 8.4e-105 386.7 1932 28.5
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 4.2e-104 384.4 846 40.7
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 8.7e-102 376.7 1847 29.3
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 5.6e-101 374.0 1832 29.0
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.7e-89 335.9 1893 28.7
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 8.7e-86 323.6 1740 28.7
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.3e-84 319.7 1713 29.2
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 4.1e-83 314.7 1702 28.4
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 3.3e-77 295.0 1875 27.7
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 7.4e-77 293.9 1821 27.0
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 9.7e-77 293.5 1859 27.6
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 3.7e-76 291.6 1772 28.4
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 3.1e-75 288.5 1662 29.7
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.9e-73 282.0 1726 27.9
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.4e-72 279.6 1861 28.4
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 7.2e-72 277.3 1646 27.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.1e-71 275.8 1818 26.9
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.8e-70 272.7 1649 27.2
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.3e-68 266.5 1708 27.3
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 6.3e-68 264.2 1665 27.4
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.1e-67 261.9 1796 25.6
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.5e-66 259.6 640 36.1
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.7e-65 256.1 1802 25.3
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.2e-63 250.0 1909 26.3
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-63 249.6 1927 26.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 6.1e-63 247.7 1669 26.2
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.0e-62 246.9 1629 28.0
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.3e-62 245.7 1425 26.9
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.1e-61 243.4 1674 26.3
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 4.4e-61 241.5 1881 27.4
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 4.4e-61 241.5 1830 26.9
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-60 239.2 1903 26.6
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-59 236.9 851 32.3
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.1e-59 236.9 1763 27.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 9.1e-59 233.8 495 42.8
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-58 233.4 1932 26.2
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 7.7e-58 230.7 656 37.5
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.0e-57 230.3 644 36.0
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.3e-57 229.9 1647 25.2
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.3e-57 229.9 1735 27.9
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.5e-57 227.6 898 32.2
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.5e-56 226.5 1730 26.3
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.5e-56 225.7 1756 26.8
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 7.2e-56 224.2 1799 26.1
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 9.4e-56 223.8 637 36.4
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.8e-54 219.5 1743 25.9
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.0e-53 216.1 1830 25.6
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 3.4e-53 215.3 1700 27.0
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.4e-53 215.3 1805 25.8
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 3.4e-53 215.3 1956 25.1
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 5.7e-53 214.5 656 32.3
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.8e-52 211.5 843 31.1
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.8e-51 209.5 898 32.6
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.8e-51 209.5 844 31.6
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.7e-49 203.0 1714 25.1
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.0e-46 193.7 1694 25.9
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-46 193.4 1702 24.6
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.3e-46 192.6 1756 26.4
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.8e-46 191.0 1718 23.5
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 8.8e-46 190.7 1703 26.4
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 1.2e-45 190.3 1728 25.3
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.3e-44 186.8 501 30.9
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 4.9e-44 184.9 692 32.8
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.8e-43 183.0 796 31.0
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.0e-42 179.5 1831 25.2
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.7e-42 179.1 1774 24.8
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.7e-42 179.1 477 41.7
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.3e-41 176.0 1699 25.8
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 9.5e-40 170.6 1748 25.0
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.0e-38 167.2 671 34.0
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.3e-38 166.0 1693 25.1
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 3.0e-38 165.6 1951 24.4
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.2e-37 163.7 1658 25.6
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 2.0e-37 162.9 536 37.1
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 7.5e-37 161.0 1745 24.4
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 3.7e-36 158.7 1747 24.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 3.2e-35 155.6 677 31.6
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 3.5e-34 152.1 642 28.5
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 1.7e-33 149.8 688 30.7
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 7.3e-32 144.4 256 53.1
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 9.5e-32 144.1 1749 23.4
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 6.2e-31 141.4 780 28.5
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.0e-31 141.0 197 46.2
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 5.2e-30 138.3 1780 24.0
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 5.8e-29 134.8 1702 24.0
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.4e-27 130.2 271 33.9
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.4e-27 128.3 1418 23.1
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.6e-26 125.2 698 25.5
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.0e-25 124.0 1702 23.7
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 5.6e-24 118.2 674 29.2
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.2e-23 117.1 720 30.3
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.6e-23 116.7 1841 23.8
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 2.8e-23 115.9 472 36.7
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 3.6e-23 115.5 1477 23.6
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 4.7e-23 115.2 247 34.8
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.1e-22 114.0 1865 24.7
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 5.2e-22 111.7 1698 24.6
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 6.8e-22 111.3 674 30.3
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.0e-21 109.8 106 53.8
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.4e-19 103.6 633 25.4
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.9e-19 103.2 666 30.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.1e-19 102.1 666 30.3
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 7.1e-19 101.3 1737 23.4
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.6e-18 100.1 667 29.4
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.0e-17 97.4 67 74.6
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 1.5e-16 93.6 147 42.2
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 1.9e-16 93.2 491 25.5
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.9e-16 93.2 88 53.4
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 3.1e-14 85.9 163 36.8
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 4.0e-14 85.5 343 28.0
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 2.6e-13 82.8 163 36.2
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 9.9e-13 80.9 61 60.7
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 1.7e-12 80.1 296 32.4
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 8.4e-12 77.8 251 33.1
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 1.9e-11 76.6 58 60.3
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-10 73.9 84 56.0
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 1.1e-08 67.4 56 53.6
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.1e-08 67.4 57 57.9
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.1e-08 67.4 91 44.0
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.9e-08 66.6 212 29.2
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.3e-08 65.9 284 25.7
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 4.3e-08 65.5 51 72.5
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 1.2e-07 63.9 467 32.5
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 2.1e-07 63.2 316 25.3
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.7e-07 62.0 362 24.6
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 8.1e-07 61.2 64 48.4
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-06 60.8 191 30.9
CBR_g22984 Chara braunii HOM05D014698 ORTHO05D016532 1.8e-06 60.1 63 47.6
PSO063G5346 Papaver somniferum HOM05D004836 ORTHO05D005150 2.4e-06 59.7 177 32.8
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 2.4e-06 59.7 63 46.0
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.8e-06 58.2 54 50.0
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 6.8e-06 58.2 249 30.5


User provided reference genes

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