Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 2.0e-253 878.6 459 100.0
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 5.1e-63 246.1 456 37.7
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 2.0e-62 244.2 456 38.6
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 2.0e-62 244.2 442 38.0
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 1.1e-60 238.4 453 36.9
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.8e-60 237.7 450 37.3
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 1.0e-58 231.9 455 35.2
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 3.8e-58 229.9 450 36.4
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 5.0e-58 229.6 438 36.1
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 1.1e-57 228.4 442 34.6
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.4e-57 228.0 450 36.0
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 9.4e-57 225.3 425 36.2
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 2.1e-56 224.2 450 35.3
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 3.9e-55 219.9 455 34.1
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 9.7e-54 215.3 452 34.5
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.3e-53 214.9 438 34.5
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.3e-53 214.9 427 37.2
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 3.1e-52 210.3 438 34.0
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 2.6e-51 207.2 443 33.9
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.3e-50 204.9 366 39.3
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 4.2e-49 199.9 450 34.0
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 4.7e-48 196.4 449 34.1
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 1.8e-47 194.5 452 33.4
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 3.0e-47 193.7 450 32.9
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 1.7e-45 188.0 414 34.5
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 2.2e-45 187.6 198 55.1
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.1e-44 185.3 432 32.6
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 9.1e-44 182.2 445 31.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.3e-42 178.3 355 35.2
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 5.5e-41 172.9 333 37.5
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 9.4e-41 172.2 452 31.0
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 2.7e-40 170.6 347 34.3
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 4.7e-40 169.9 445 31.0
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.0e-39 168.7 337 36.5
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 8.8e-39 165.6 437 31.4
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 5.7e-38 162.9 340 35.3
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 7.5e-38 162.5 367 33.8
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 9.8e-38 162.2 338 35.2
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 1.3e-37 161.8 433 31.2
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.3e-37 161.8 357 33.6
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 2.0e-35 154.5 341 34.3
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 2.0e-35 154.5 342 33.9
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 1.0e-34 152.1 348 32.2
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.1e-33 148.7 338 33.7
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 2.5e-33 147.5 340 32.1
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 4.2e-33 146.7 353 33.1
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.1e-32 144.4 347 32.0
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 4.7e-32 143.3 338 32.5
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 1.8e-31 141.4 444 28.4
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 3.0e-31 140.6 343 34.1
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 5.2e-31 139.8 344 33.1
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 8.9e-31 139.0 450 27.8
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.5e-30 138.3 467 27.2
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 2.6e-30 137.5 342 30.4
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.3e-29 135.2 250 37.2
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 2.2e-29 134.4 361 31.3
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 2.8e-29 134.0 345 32.8
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 2.8e-29 134.0 200 41.0
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 3.7e-29 133.7 355 32.7
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 4.9e-29 133.3 360 32.2
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 6.3e-29 132.9 358 32.7
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 8.3e-29 132.5 357 32.2
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 8.3e-29 132.5 357 32.2
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 1.1e-28 132.1 445 29.4
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 1.4e-28 131.7 360 31.9
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 3.1e-28 130.6 355 30.4
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 9.2e-28 129.0 347 31.4
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 9.2e-28 129.0 339 31.6
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.0e-27 127.9 347 31.1
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.0e-27 127.9 339 31.0
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 3.5e-27 127.1 347 30.8
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 2.9e-26 124.0 347 32.0
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.1e-25 122.1 453 26.3
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 4.0e-23 113.6 337 27.9
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 6.8e-23 112.8 361 29.9
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 4.4e-22 110.2 167 38.3
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.4e-20 104.4 344 29.1
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 4.1e-20 103.6 338 28.4
HanXRQChr06g0184751 Helianthus annuus HOM05D007725 ORTHO05D009774 9.2e-20 102.4 203 37.4
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 3.5e-19 100.5 252 29.8
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 3.0e-18 97.4 367 27.0
CBR_g50708 Chara braunii HOM05D007725 ORTHO05D009774 1.9e-17 94.7 312 29.8
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 1.1e-15 89.0 134 43.3
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.1e-12 79.0 117 42.7
Thecc.07G020700 Theobroma cacao HOM05D007725 ORTHO05D009774 6.2e-08 63.2 114 35.1
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 1.8e-07 61.6 177 32.2


User provided reference genes

Program Settings