Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.3e-185 652.9 334 100.0
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 9.7e-128 460.7 362 66.3
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.8e-126 456.4 365 65.2
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 9.0e-126 454.1 364 65.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 9.0e-126 454.1 368 66.0
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.5e-125 453.4 364 65.7
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.4e-125 452.2 368 65.8
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 3.8e-124 448.7 358 65.6
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 3.8e-124 448.7 368 63.3
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 5.0e-124 448.4 356 66.9
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 5.0e-124 448.4 358 65.1
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 8.5e-124 447.6 347 64.0
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 8.5e-124 447.6 360 65.3
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 8.5e-124 447.6 361 65.1
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.1e-123 447.2 358 64.5
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 4.2e-123 445.3 355 67.3
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 7.2e-123 444.5 363 65.0
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.1e-122 443.0 367 65.7
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 2.1e-122 443.0 340 63.2
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 2.7e-122 442.6 365 65.2
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.6e-122 442.2 363 63.6
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 4.6e-122 441.8 367 65.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 6.1e-122 441.4 360 65.0
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 6.1e-122 441.4 364 64.6
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 7.9e-122 441.0 364 64.0
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.0e-121 440.7 364 65.7
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.4e-121 440.3 361 64.3
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.8e-121 439.9 365 60.8
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 1.8e-121 439.9 364 63.7
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.8e-121 439.9 356 64.6
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 2.3e-121 439.5 347 65.7
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.0e-121 439.1 364 64.6
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 5.1e-121 438.3 364 60.2
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 8.8e-121 437.6 360 64.4
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.1e-120 437.2 325 70.8
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.1e-120 437.2 383 61.4
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.5e-120 436.8 364 63.7
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.0e-120 436.4 363 65.0
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.0e-120 436.4 364 63.7
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 2.5e-120 436.0 351 65.5
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 2.5e-120 436.0 348 64.9
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 4.3e-120 435.3 353 63.5
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 4.3e-120 435.3 362 64.1
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.4e-120 434.5 364 63.7
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 9.7e-120 434.1 365 63.8
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.3e-119 433.7 350 62.9
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.3e-119 433.7 364 63.5
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.2e-119 433.0 364 62.6
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 3.7e-119 432.2 350 63.4
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 6.9e-118 427.9 333 61.0
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-117 426.4 359 63.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.2e-116 422.9 336 65.2
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 2.9e-116 422.5 344 65.1
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.9e-116 422.5 362 61.0
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 5.0e-116 421.8 335 64.8
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 5.0e-116 421.8 367 59.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 8.5e-116 421.0 367 61.6
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.1e-115 420.6 342 64.3
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.4e-115 420.2 334 66.8
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.2e-115 419.1 369 62.3
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 4.2e-115 418.7 328 60.7
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.6e-114 415.6 374 61.2
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 7.9e-114 414.5 351 61.8
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.8e-113 413.3 338 63.0
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.3e-113 412.9 388 57.7
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.0e-113 412.5 341 62.5
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.1e-113 411.8 422 55.9
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.6e-112 409.5 355 61.4
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.6e-112 409.5 355 60.3
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 5.7e-112 408.3 335 62.1
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 5.7e-112 408.3 331 64.0
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 7.4e-112 407.9 358 55.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 6.3e-111 404.8 329 64.7
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.4e-110 403.7 338 65.1
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.1e-110 402.5 338 63.6
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 3.1e-110 402.5 353 61.8
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-109 400.6 331 62.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.6e-109 399.4 335 61.8
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.6e-109 399.4 326 59.2
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 3.5e-109 399.1 316 59.5
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.7e-109 397.9 339 59.9
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 2.2e-108 396.4 363 54.8
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.5e-107 392.9 319 63.6
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.2e-107 392.5 363 54.5
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 5.5e-107 391.7 329 63.8
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.6e-106 390.2 328 62.8
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.7e-106 389.4 335 58.5
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 3.6e-106 389.0 335 62.4
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.6e-106 389.0 328 62.8
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.8e-105 386.7 422 51.2
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 5.2e-105 385.2 328 62.2
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 9.7e-104 380.9 330 59.1
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 2.8e-103 379.4 333 58.6
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 3.7e-103 379.0 332 58.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 4.8e-103 378.6 341 62.8
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 8.2e-103 377.9 324 63.0
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 8.2e-103 377.9 329 62.3
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 7.0e-102 374.8 318 59.7
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 7.7e-101 371.3 329 56.5
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.0e-100 370.9 331 58.9
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 2.9e-100 369.4 332 56.0
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.9e-100 369.4 218 73.4
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 8.5e-100 367.9 322 59.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.5e-99 367.1 319 59.9
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.5e-99 367.1 329 60.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 4.7e-98 362.1 301 62.1
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 6.1e-98 361.7 303 61.7
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.4e-97 360.5 321 60.1
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 2.3e-97 359.8 319 61.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 8.8e-97 357.8 319 61.1
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.5e-96 357.1 319 58.9
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 6.3e-95 351.7 318 58.5
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-94 350.9 347 55.3
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 9.1e-94 347.8 299 59.9
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 2.5e-91 339.7 340 48.2
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 2.7e-90 336.3 301 61.8
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 4.7e-90 335.5 226 65.5
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.7e-90 335.5 345 56.5
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 3.4e-88 329.3 299 59.9
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 4.9e-87 325.5 266 54.1
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.3e-87 324.7 232 63.8
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.8e-86 323.6 339 51.9
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 3.1e-86 322.8 233 64.4
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 9.2e-86 321.2 333 54.1
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.0e-84 317.8 336 50.0
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.3e-84 316.6 294 60.9
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.1e-83 314.3 257 59.5
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 9.5e-83 311.2 215 62.3
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 9.5e-83 311.2 301 56.1
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.6e-82 310.5 332 54.2
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.0e-81 307.8 330 49.4
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.4e-81 307.4 292 50.0
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.0e-80 303.5 299 49.5
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 2.6e-80 303.1 335 45.7
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 7.8e-77 291.6 316 53.5
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.3e-76 290.8 285 57.9
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 2.5e-75 286.6 301 49.2
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.3e-75 286.2 298 54.7
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-74 284.3 321 50.8
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 3.6e-74 282.7 318 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 8.0e-74 281.6 315 51.1
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 6.8e-73 278.5 332 46.1
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.2e-72 277.7 319 51.1
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 2.0e-72 276.9 193 62.7
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.4e-72 276.2 361 47.6
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 3.4e-72 276.2 317 52.1
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 4.4e-72 275.8 318 51.9
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.2e-71 273.5 315 48.9
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 4.9e-71 272.3 311 51.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.1e-70 269.2 304 50.7
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 7.0e-70 268.5 322 49.1
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.2e-69 267.7 319 50.8
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 4.6e-69 265.8 311 52.4
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 2.3e-68 263.5 322 49.1
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.1e-61 240.4 203 56.2
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 6.0e-61 238.8 220 49.5
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.5e-56 224.2 347 41.5
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 3.8e-55 219.5 351 40.5
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 9.2e-54 214.9 321 42.4
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-51 208.0 130 70.0
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 9.6e-51 204.9 110 85.5
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.1e-49 199.9 109 83.5
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.8e-47 193.0 180 51.7
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.4e-38 162.5 93 73.1
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 2.0e-16 90.9 102 39.2
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 6.1e-13 79.3 43 88.4
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 3.9e-12 76.6 38 84.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 8.7e-12 75.5 48 68.8
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 1.9e-11 74.3 65 61.5
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 1.3e-10 71.6 44 75.0
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 1.3e-10 71.6 40 82.5
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 1.3e-10 71.6 40 82.5
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 1.5e-08 64.7 45 71.1
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 7.7e-08 62.4 32 90.6
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 1.3e-07 61.6 50 64.0
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-07 61.2 33 78.8
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 1.1e-06 58.5 30 86.7
FAN10G2408 Fragaria x ananassa HOM05D003920 ORTHO05D017698 1.4e-06 58.2 48 62.5


User provided reference genes

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