Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.2e-106 389.8 192 100.0
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 9.0e-86 320.5 190 79.5
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 2.5e-80 302.4 186 75.3
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 9.6e-80 300.4 193 75.1
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 7.4e-72 274.2 187 70.6
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.8e-71 272.3 184 69.6
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 8.2e-71 270.8 191 69.6
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 4.0e-70 268.5 187 67.4
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.4e-69 265.4 189 66.7
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 7.6e-69 264.2 188 63.8
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.6e-69 264.2 189 66.7
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 2.9e-68 262.3 184 65.2
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 6.5e-68 261.2 159 74.8
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.9e-67 259.6 187 65.2
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 4.2e-67 258.5 190 62.6
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.5e-67 258.1 163 70.6
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 5.5e-67 258.1 188 62.2
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.5e-67 258.1 181 66.9
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 5.5e-67 258.1 179 64.2
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 7.1e-67 257.7 188 62.2
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 9.3e-67 257.3 187 67.4
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 9.3e-67 257.3 187 67.4
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.2e-66 256.9 189 66.1
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 6.0e-66 254.6 185 64.3
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.0e-65 253.8 189 61.9
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.0e-65 253.8 183 61.7
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 1.8e-65 253.1 188 62.8
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 1.8e-65 253.1 162 69.1
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.3e-65 252.7 188 61.2
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 5.1e-65 251.5 186 65.1
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 6.7e-65 251.1 188 62.2
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 8.7e-65 250.8 187 62.6
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 8.7e-65 250.8 188 62.2
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.1e-64 250.4 186 61.8
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.1e-64 250.4 187 61.0
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 2.5e-64 249.2 188 59.6
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 3.3e-64 248.8 156 69.9
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 7.4e-64 247.7 184 64.1
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 9.7e-64 247.3 184 63.6
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 9.7e-64 247.3 184 64.1
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 9.7e-64 247.3 189 63.5
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 9.7e-64 247.3 186 61.8
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.3e-63 246.9 189 60.8
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.2e-63 246.1 181 66.3
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 2.8e-63 245.7 190 62.1
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 3.7e-63 245.4 188 59.0
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 3.7e-63 245.4 186 60.8
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 3.7e-63 245.4 177 65.0
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 3.7e-63 245.4 188 64.4
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 4.8e-63 245.0 209 57.9
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 6.3e-63 244.6 181 62.4
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 8.2e-63 244.2 185 62.7
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 8.2e-63 244.2 188 58.0
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.1e-62 243.8 150 70.7
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 2.4e-62 242.7 189 60.8
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 2.4e-62 242.7 150 69.3
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 4.1e-62 241.9 181 64.1
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 4.1e-62 241.9 189 59.8
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 5.3e-62 241.5 184 60.9
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 9.0e-62 240.7 191 60.2
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 9.0e-62 240.7 191 57.6
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.0e-61 239.6 150 70.0
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 3.4e-61 238.8 192 58.3
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.4e-61 238.8 189 60.3
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 3.4e-61 238.8 191 61.8
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 4.5e-61 238.4 180 60.6
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 4.5e-61 238.4 187 57.8
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 4.5e-61 238.4 186 59.1
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.0e-60 237.3 184 62.0
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.0e-60 237.3 150 68.0
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 1.3e-60 236.9 181 61.3
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.2e-60 236.1 172 66.3
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 5.0e-60 235.0 187 58.3
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 5.0e-60 235.0 180 61.7
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 5.0e-60 235.0 180 61.7
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 6.5e-60 234.6 187 58.3
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 6.5e-60 234.6 181 58.6
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 6.5e-60 234.6 188 57.4
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 6.5e-60 234.6 182 61.0
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.1e-59 233.8 183 59.6
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 1.9e-59 233.0 165 63.6
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 3.2e-59 232.3 180 60.6
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 4.2e-59 231.9 186 59.7
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 4.2e-59 231.9 185 63.8
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 5.5e-59 231.5 182 57.7
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 7.2e-59 231.1 187 57.8
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 1.0e-57 227.3 182 60.4
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.4e-57 226.9 186 57.0
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 1.8e-57 226.5 180 58.9
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 1.8e-57 226.5 184 59.2
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 2.3e-57 226.1 182 60.4
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 2.3e-57 226.1 180 58.9
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.3e-57 226.1 185 54.6
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 3.0e-57 225.7 186 56.5
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 3.0e-57 225.7 186 56.5
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 3.0e-57 225.7 182 60.4
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.0e-57 225.7 182 58.2
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 3.9e-57 225.3 180 59.4
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 8.8e-57 224.2 197 53.3
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 1.5e-56 223.4 186 58.6
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 1.7e-55 219.9 181 59.7
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.1e-54 217.2 180 57.2
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 2.4e-54 216.1 184 59.8
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 9.1e-54 214.2 146 61.0
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 2.7e-50 202.6 150 59.3
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 2.0e-48 196.4 162 62.3
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.4e-46 190.3 164 51.2
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 3.8e-44 182.2 188 52.7
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 5.0e-44 181.8 125 71.2
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 6.5e-44 181.4 161 50.9
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.9e-43 179.9 182 46.2
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.5e-43 179.5 154 53.2
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.0e-41 174.1 155 49.7
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.0e-41 174.1 155 49.7
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 5.2e-41 171.8 186 42.5
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.3e-40 169.1 148 49.3
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 9.7e-40 167.5 120 63.3
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 2.8e-39 166.0 110 74.5
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 9.1e-38 161.0 152 56.6
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.2e-36 156.4 115 63.5
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 7.2e-35 151.4 118 60.2
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.6e-34 149.1 88 73.9
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 1.3e-31 140.6 125 56.8
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 1.0e-28 131.0 121 61.2
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 7.2e-27 124.8 168 37.5
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 2.1e-26 123.2 75 73.3
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.1e-22 109.4 67 73.1
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 1.0e-20 104.4 67 70.1
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 1.7e-20 103.6 68 64.7
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 1.9e-19 100.1 67 67.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 4.7e-18 95.5 104 45.2
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.8e-17 93.6 148 32.4
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 6.8e-17 91.7 143 31.5
SGA_v2.0_scaffold16G07845 Striga asiatica HOM05D005543 ORTHO05D006584 8.3e-15 84.7 93 51.6
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 6.6e-12 75.1 141 22.7
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 3.3e-11 72.8 73 47.9
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 3.1e-09 66.2 68 50.0


User provided reference genes

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