Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 9.6e-167 590.1 303 100.0
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.7e-129 465.7 304 80.9
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.7e-129 465.7 304 80.9
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 2.2e-126 456.1 305 78.7
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 8.5e-123 444.1 308 76.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 8.5e-123 444.1 305 77.0
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 5.9e-116 421.4 291 75.9
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.3e-115 420.2 291 75.9
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 5.0e-115 418.3 299 74.9
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.5e-114 416.8 290 75.5
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.9e-114 416.4 282 76.6
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.1e-113 412.9 297 73.4
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 3.6e-113 412.1 303 72.6
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.2e-111 407.1 301 71.4
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 1.7e-110 403.3 301 72.8
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.7e-110 403.3 303 69.6
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 2.8e-110 402.5 282 75.2
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.1e-109 399.1 302 71.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 5.3e-109 398.3 279 74.6
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 7.0e-109 397.9 306 70.6
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.7e-108 396.0 305 70.2
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 2.2e-107 392.9 330 65.5
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 6.5e-107 391.3 304 70.1
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.5e-106 390.2 299 69.9
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.9e-106 389.8 299 70.2
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.9e-106 389.8 260 76.5
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.2e-106 389.0 282 73.0
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 4.2e-106 388.7 299 69.9
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 7.2e-106 387.9 282 71.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 2.7e-105 386.0 291 69.8
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.6e-105 385.6 299 69.6
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.7e-105 385.2 299 69.6
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 6.1e-105 384.8 290 69.0
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 6.1e-105 384.8 277 71.8
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.0e-104 384.0 299 69.9
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.0e-104 384.0 282 72.0
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.0e-104 384.0 297 69.0
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 5.2e-104 381.7 282 69.5
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 6.8e-104 381.3 281 70.8
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 8.8e-104 380.9 282 70.6
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 8.8e-104 380.9 300 68.3
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 8.8e-104 380.9 263 73.8
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.5e-103 380.2 302 66.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.5e-103 380.2 294 67.7
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.5e-103 380.2 292 67.1
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.5e-103 380.2 306 67.6
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 2.0e-103 379.8 282 70.2
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 2.0e-103 379.8 253 75.1
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 2.0e-103 379.8 303 67.0
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 4.4e-103 378.6 300 68.3
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 4.4e-103 378.6 281 70.5
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 5.7e-103 378.3 281 70.1
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 7.5e-103 377.9 281 69.0
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.3e-102 377.1 296 67.2
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.7e-102 376.7 278 68.7
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.7e-102 376.7 282 69.9
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.7e-102 376.7 281 70.1
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 2.8e-102 375.9 278 68.0
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 2.8e-102 375.9 278 68.7
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 2.8e-102 375.9 300 68.0
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.7e-102 375.6 278 68.3
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 3.7e-102 375.6 282 70.9
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 6.3e-102 374.8 281 68.7
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 6.3e-102 374.8 284 69.0
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 6.3e-102 374.8 284 69.0
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 6.3e-102 374.8 275 70.5
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 8.3e-102 374.4 281 69.4
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 8.3e-102 374.4 286 69.9
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.1e-101 374.0 274 70.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.4e-101 373.6 244 76.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.4e-101 373.6 284 68.7
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.8e-101 373.2 290 68.6
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 2.4e-101 372.9 278 67.6
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 3.1e-101 372.5 284 68.7
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 3.1e-101 372.5 280 69.6
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.1e-101 372.5 280 69.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 3.1e-101 372.5 278 69.1
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.1e-101 372.5 300 67.3
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 4.1e-101 372.1 292 67.1
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 9.1e-101 370.9 278 68.0
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.2e-100 370.5 282 68.4
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.6e-100 370.2 271 70.8
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 2.0e-100 369.8 278 69.8
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 4.5e-100 368.6 275 66.9
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 4.5e-100 368.6 289 68.5
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 5.9e-100 368.2 263 72.6
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.0e-99 367.5 284 68.3
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.3e-99 366.3 277 68.6
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 6.5e-99 364.8 340 58.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.1e-98 364.0 304 64.5
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.5e-98 363.6 304 64.5
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 5.5e-98 361.7 262 70.6
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 9.5e-98 360.9 258 73.6
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.6e-97 360.1 279 68.5
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 2.8e-97 359.4 360 58.1
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 1.4e-96 357.1 259 69.9
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.8e-96 356.7 288 66.0
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 2.3e-96 356.3 288 66.0
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 3.0e-96 355.9 278 68.0
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 8.8e-96 354.4 237 73.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.7e-94 350.1 363 53.7
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.9e-94 348.6 299 61.9
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.1e-93 345.9 302 65.2
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 5.4e-93 345.1 204 82.8
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.7e-92 342.8 305 60.3
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 4.5e-92 342.0 241 70.5
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 3.8e-91 339.0 279 63.8
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 4.3e-90 335.5 197 82.2
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 6.1e-89 331.6 293 59.4
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.8e-88 330.1 259 65.6
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.2e-87 327.4 265 69.1
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.7e-86 323.6 281 63.3
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.2e-86 323.2 300 60.7
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.9e-86 322.8 243 70.4
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 3.2e-85 319.3 277 61.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 5.2e-80 302.0 240 64.2
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 4.4e-79 298.9 240 63.8
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 1.3e-78 297.4 175 82.9
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.2e-78 296.6 241 60.6
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.5e-74 283.9 272 57.7
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 4.4e-71 272.3 202 64.9
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.6e-63 246.5 157 79.0
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 9.6e-58 228.0 136 79.4
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.9e-55 218.0 205 60.5
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.4e-53 212.2 176 67.0
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.6e-50 202.2 221 57.5
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 6.5e-30 135.6 219 42.9
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 1.2e-28 131.3 101 68.3
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 6.0e-28 129.0 108 58.3
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 4.1e-24 116.3 235 32.8
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 4.1e-24 116.3 83 66.3
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.7e-22 110.9 69 76.8
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.9e-22 110.2 87 60.9
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 7.9e-20 102.1 64 71.9
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 8.8e-19 98.6 62 67.7
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-18 97.8 92 58.7
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.9e-18 97.4 93 59.1
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 1.3e-17 94.7 103 55.3
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 4.5e-15 86.3 208 32.7
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 4.7e-12 76.3 39 82.1
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 7.9e-12 75.5 64 54.7
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 1.5e-10 71.2 57 64.9
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 7.4e-10 68.9 35 82.9
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.7e-09 66.6 35 80.0
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.8e-08 64.3 34 73.5
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.9e-07 59.3 31 87.1
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 1.7e-06 57.8 70 50.0


User provided reference genes

Program Settings