Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.3e-102 375.6 190 100.0
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 3.4e-61 238.8 144 83.3
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-58 230.3 139 80.6
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 3.5e-58 228.8 144 78.5
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.0e-57 227.3 144 77.8
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 6.6e-57 224.6 144 79.9
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.3e-56 222.2 144 79.2
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 7.3e-56 221.1 141 79.4
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.6e-55 219.9 145 77.9
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.6e-55 218.8 141 78.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.2e-55 218.0 146 76.7
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 6.2e-55 218.0 159 70.4
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.1e-54 217.2 144 77.1
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-54 216.9 144 76.4
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.4e-54 216.9 141 77.3
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.8e-54 216.5 145 76.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.4e-54 216.1 146 76.0
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.4e-54 216.1 141 78.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 3.1e-54 215.7 144 76.4
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.1e-54 215.7 141 77.3
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 4.0e-54 215.3 145 75.9
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 5.3e-54 214.9 138 79.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 6.9e-54 214.5 155 73.5
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 6.9e-54 214.5 144 75.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.5e-53 213.4 144 75.7
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.5e-53 213.4 141 77.3
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.6e-53 212.6 141 76.6
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.4e-53 212.2 142 76.1
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 3.4e-53 212.2 139 76.3
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.4e-53 212.2 132 80.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 4.4e-53 211.8 141 77.3
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 5.8e-53 211.5 146 74.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 7.6e-53 211.1 144 74.3
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.3e-52 210.3 130 78.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.3e-52 210.3 137 77.4
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.3e-52 210.3 133 78.2
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.7e-52 209.9 144 73.6
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 1.7e-52 209.9 144 73.6
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.7e-52 209.9 141 75.9
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.2e-52 209.5 144 75.0
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 4.9e-52 208.4 142 73.9
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.4e-52 208.0 137 73.7
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 8.4e-52 207.6 140 74.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 8.4e-52 207.6 146 71.9
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.2e-51 205.3 141 74.5
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 5.4e-51 204.9 138 75.4
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 5.4e-51 204.9 133 75.9
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 7.1e-51 204.5 137 75.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.3e-51 204.1 137 73.0
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.3e-51 204.1 137 73.0
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.6e-50 203.4 140 72.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.6e-50 203.4 133 74.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 2.1e-50 203.0 133 75.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.5e-50 202.2 137 71.5
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 7.9e-50 201.1 141 75.9
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.0e-49 200.7 144 72.9
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.3e-49 200.3 181 61.9
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.3e-49 200.3 152 64.5
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.7e-49 199.9 131 74.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.9e-49 198.7 197 57.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 6.6e-49 198.0 136 72.8
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-48 197.2 135 74.1
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.9e-48 196.4 138 71.7
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.5e-48 196.1 138 72.5
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.5e-48 196.1 141 70.9
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 3.3e-48 195.7 146 67.8
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.3e-48 195.3 139 71.2
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.6e-48 194.1 129 73.6
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.8e-47 192.6 119 79.0
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 6.2e-47 191.4 157 65.6
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.1e-46 190.7 204 54.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.3e-46 188.3 146 67.1
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 5.3e-46 188.3 120 77.5
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 6.9e-46 188.0 123 76.4
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.5e-45 186.8 142 64.8
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.5e-45 186.8 142 64.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 5.8e-45 184.9 143 67.8
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 7.6e-45 184.5 127 73.2
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.9e-44 182.6 137 65.0
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 6.4e-44 181.4 147 62.6
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.4e-44 181.0 131 71.8
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.0e-42 174.9 129 70.5
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.3e-41 172.9 147 59.9
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-40 170.6 111 74.8
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.3e-39 167.2 147 59.2
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.8e-39 166.0 127 69.3
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.7e-39 165.6 147 57.1
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-37 159.8 133 60.2
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.0e-37 159.8 135 62.2
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.4e-37 159.1 147 55.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.5e-37 158.7 146 58.2
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.8e-37 158.3 147 55.8
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.8e-37 158.3 128 60.2
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.2e-36 156.4 147 55.1
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.2e-36 156.4 141 56.7
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.2e-36 156.4 131 59.5
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 4.9e-36 155.2 134 59.7
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.9e-36 155.2 141 56.0
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.5e-34 149.1 134 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.6e-34 148.7 126 59.5
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 4.6e-34 148.7 135 60.0
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-33 147.5 131 57.3
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.3e-33 147.1 130 55.4
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.3e-33 147.1 130 55.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.3e-33 147.1 131 55.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 3.0e-33 146.0 156 54.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 8.7e-33 144.4 126 59.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 4.3e-32 142.1 118 59.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 9.6e-32 141.0 126 57.9
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 3.7e-31 139.0 113 64.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.1e-30 136.0 95 68.4
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.0e-28 131.0 83 78.3
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 2.2e-28 129.8 116 59.5
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.4e-27 127.1 94 68.1
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.2e-26 124.0 89 73.0
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 6.1e-26 121.7 125 49.6
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 6.1e-26 121.7 133 47.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 2.3e-25 119.8 147 46.9
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 3.0e-25 119.4 121 51.2
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.0e-25 119.4 121 51.2
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 3.9e-25 119.0 90 68.9
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 5.1e-25 118.6 84 70.2
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 6.7e-25 118.2 121 50.4
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 6.7e-25 118.2 92 69.6
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-24 117.5 121 51.2
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 2.5e-24 116.3 121 50.4
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.7e-24 115.2 115 53.9
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 7.4e-24 114.8 147 45.6
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-23 113.6 101 54.5
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.7e-20 103.6 127 45.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.8e-20 102.4 147 40.1
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.5e-20 101.7 81 65.4
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 4.2e-19 99.0 77 70.1
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 9.4e-19 97.8 130 43.1
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.7e-18 96.3 52 88.5
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 6.1e-18 95.1 55 81.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 6.7e-17 91.7 153 38.6
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.1e-16 90.9 55 78.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 9.7e-16 87.8 144 40.3
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 9.7e-16 87.8 62 67.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.2e-15 84.7 52 76.9
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.3e-12 77.4 87 48.3
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.9e-12 76.3 123 34.1
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 2.5e-11 73.2 87 46.0
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.2e-11 72.8 41 85.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 4.2e-11 72.4 71 56.3


User provided reference genes

Program Settings