Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 9.8e-305 1049.3 513 100.0
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 7.6e-124 448.4 278 81.3
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 1.6e-121 440.7 278 79.1
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 4.6e-113 412.5 288 74.7
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 3.3e-111 406.4 300 70.0
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 4.3e-111 406.0 281 73.0
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 8.2e-110 401.7 295 70.8
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 8.2e-110 401.7 243 81.1
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 3.1e-109 399.8 279 71.7
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 5.3e-109 399.1 257 77.0
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 9.0e-109 398.3 283 70.3
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 9.0e-109 398.3 283 70.3
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 1.2e-108 397.9 243 80.2
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 7.7e-108 395.2 243 78.6
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 7.7e-108 395.2 242 80.2
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 7.7e-108 395.2 280 70.0
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 6.5e-107 392.1 291 69.4
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 8.5e-107 391.7 283 72.4
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 3.2e-106 389.8 289 69.6
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 2.1e-105 387.1 284 67.6
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 2.1e-105 387.1 279 71.0
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 2.7e-105 386.7 264 75.4
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.0e-104 384.8 285 70.2
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 3.9e-104 382.9 282 70.6
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 6.7e-104 382.1 254 76.0
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 2.0e-103 380.6 288 67.0
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 2.5e-103 380.2 284 70.1
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 3.3e-103 379.8 294 67.3
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 4.3e-103 379.4 257 72.4
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 5.7e-103 379.0 255 74.9
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 9.7e-103 378.3 269 72.5
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 2.8e-102 376.7 257 71.6
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 8.2e-102 375.2 252 72.6
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 1.1e-101 374.8 278 69.8
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.2e-100 371.3 257 70.8
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 3.4e-100 369.8 279 69.9
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 3.4e-100 369.8 271 66.4
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 3.4e-100 369.8 283 66.8
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 5.9e-100 369.0 267 68.2
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 7.7e-100 368.6 271 69.4
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 1.0e-99 368.2 284 66.5
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 1.3e-99 367.9 270 72.2
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.3e-99 367.9 270 72.2
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.2e-99 367.1 271 72.0
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 6.5e-99 365.5 271 72.0
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 8.5e-99 365.2 241 73.9
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.9e-98 364.0 286 69.2
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 4.2e-98 362.8 241 74.7
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 7.2e-98 362.1 241 72.6
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 7.2e-98 362.1 290 65.9
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 9.4e-98 361.7 251 72.1
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 2.1e-97 360.5 278 68.0
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 3.6e-97 359.8 251 72.5
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 6.1e-97 359.0 300 62.7
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 1.0e-96 358.2 277 66.4
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 1.8e-96 357.5 235 75.7
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 1.8e-96 357.5 279 67.0
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 3.0e-96 356.7 296 62.8
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 8.8e-96 355.1 269 67.7
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 1.5e-95 354.4 265 69.1
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 1.7e-94 350.9 250 69.2
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 1.1e-93 348.2 254 67.7
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 1.4e-93 347.8 273 68.1
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.4e-93 347.8 285 63.2
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 5.3e-93 345.9 295 61.4
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 7.0e-93 345.5 283 66.4
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 1.7e-91 340.9 286 62.2
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 2.2e-91 340.5 271 65.7
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 2.9e-91 340.1 299 60.5
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 9.4e-90 335.1 249 67.1
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 1.2e-89 334.7 254 68.5
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 2.7e-89 333.6 278 62.9
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 2.7e-89 333.6 268 64.6
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 3.6e-89 333.2 234 69.2
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 1.4e-88 331.3 278 62.6
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 1.4e-88 331.3 285 60.4
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.8e-88 330.9 290 60.3
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.8e-88 330.9 275 60.4
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 4.4e-87 326.2 247 67.2
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 9.7e-87 325.1 283 62.5
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 2.8e-86 323.6 266 64.3
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 3.7e-86 323.2 254 66.1
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 4.1e-85 319.7 224 71.0
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 2.9e-83 313.5 259 62.5
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 2.9e-83 313.5 263 61.6
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 8.5e-83 312.0 233 67.0
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 3.0e-80 303.5 264 58.0
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 2.8e-78 297.0 188 76.6
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 8.3e-78 295.4 235 62.6
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 1.6e-76 291.2 231 64.5
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 3.5e-76 290.0 241 58.9
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 1.7e-75 287.7 244 61.9
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 5.0e-75 286.2 201 69.7
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 8.8e-72 275.4 198 69.2
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 1.9e-66 257.7 290 52.1
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 6.1e-65 252.7 186 66.7
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 8.3e-62 242.3 228 54.8
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 7.8e-60 235.7 227 52.4
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 6.8e-56 222.6 271 50.6
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 5.8e-55 219.5 236 45.8
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 4.9e-46 189.9 132 70.5
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.3e-43 181.8 280 42.9
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 2.5e-42 177.6 238 40.8
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 5.2e-40 169.9 276 35.1
SGA_v2.0_scaffold341G49352 Striga asiatica HOM05D020939 ORTHO05D008697 8.9e-40 169.1 124 71.8
SGA_v2.0_scaffold64G22089 Striga asiatica HOM05D020939 ORTHO05D010664 1.1e-34 152.1 129 55.8
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 5.2e-32 143.3 244 34.8
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 5.4e-29 133.3 101 66.3
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 5.4e-29 133.3 227 39.6
SGA_v2.0_scaffold61G21292 Striga asiatica HOM05D020939 ORTHO05D010664 5.6e-26 123.2 104 56.7
SGA_v2.0_scaffold19G08713 Striga asiatica HOM05D020939 ORTHO05D010664 9.6e-26 122.5 104 56.7
SGA_v2.0_scaffold34G13589 Striga asiatica HOM05D020939 ORTHO05D010664 9.6e-26 122.5 104 56.7
SGA_v2.0_scaffold380G50360 Striga asiatica HOM05D020939 ORTHO05D010664 1.8e-24 118.2 104 54.8
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 3.2e-21 107.5 100 53.0
SGA_v2.0_scaffold40G15404 Striga asiatica HOM05D000239 ORTHO05D000484 3.5e-20 104.0 80 61.2
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 3.9e-19 100.5 93 53.8
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 8.1e-17 92.8 94 52.1
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 3.5e-12 77.4 61 59.0
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 3.5e-12 77.4 43 81.4
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 6.0e-12 76.6 103 45.6
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 9.6e-10 69.3 53 54.7
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 4.8e-09 67.0 55 54.5
Rhsim06G0079000 Rhododendron simsii HOM05D021265 ORTHO05D338543 5.8e-07 60.1 49 59.2
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 7.6e-07 59.7 70 48.6
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 7.6e-07 59.7 70 48.6
Rhsim03G0260900 Rhododendron simsii HOM05D021265 ORTHO05D339689 7.6e-07 59.7 56 53.6
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 2.2e-06 58.2 70 47.1
SGA_v2.0_scaffold195G40830 Striga asiatica HOM05D008771 ORTHO05D010664 3.8e-06 57.4 88 31.8
SGA_v2.0_scaffold103G30055 Striga asiatica HOM05D008771 ORTHO05D010664 8.4e-06 56.2 88 30.7


User provided reference genes

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