Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.7e-251 870.2 426 100.0
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 5.7e-157 558.1 515 58.1
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.1e-149 533.9 508 56.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 3.0e-142 509.2 508 52.8
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.5e-141 506.9 507 53.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.6e-141 506.1 478 55.6
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 5.7e-141 505.0 508 53.3
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.3e-140 503.8 508 53.5
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.3e-140 503.8 507 53.3
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-138 497.3 508 52.0
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.0e-138 496.5 508 54.3
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.6e-138 496.1 506 51.8
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 5.9e-138 495.0 508 51.2
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 6.5e-137 491.5 508 52.2
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.2e-136 489.2 508 52.0
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.2e-136 488.8 508 50.6
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.6e-135 486.9 508 52.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.1e-135 485.0 508 51.4
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.1e-135 485.0 508 52.0
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.8e-134 483.4 507 51.9
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 2.3e-134 483.0 508 50.4
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.2e-133 480.7 508 51.2
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.5e-133 480.3 507 51.3
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.0e-133 479.9 507 51.9
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 3.3e-133 479.2 488 51.8
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 9.7e-133 477.6 510 50.2
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.7e-132 476.9 508 51.4
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.8e-132 476.1 510 50.4
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.7e-132 475.7 508 50.2
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 3.1e-131 472.6 508 50.6
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.7e-130 469.5 509 49.7
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.0e-129 467.6 508 49.6
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.9e-129 466.1 508 49.6
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.2e-128 462.6 482 50.4
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.6e-127 460.3 461 53.4
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.7e-127 459.5 508 48.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.8e-126 456.8 508 49.2
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.3e-126 456.4 508 48.4
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.3e-126 456.4 508 48.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.8e-126 454.9 508 48.2
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 8.8e-126 454.5 508 49.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.8e-126 454.5 508 48.2
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 8.8e-126 454.5 529 47.3
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.6e-125 453.0 509 48.5
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 4.8e-124 448.7 506 48.4
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.1e-123 447.6 508 48.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.1e-123 447.6 508 47.6
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-123 447.2 513 47.6
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.8e-123 446.8 505 47.5
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.4e-123 446.4 495 47.9
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 9.1e-123 444.5 508 46.5
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.2e-122 444.1 505 47.9
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.2e-122 444.1 508 48.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.0e-122 443.4 508 46.7
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.0e-122 443.4 497 48.3
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 4.5e-122 442.2 508 48.4
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 7.7e-122 441.4 390 57.7
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.3e-121 439.9 506 47.0
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.3e-121 439.9 508 47.4
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.9e-121 439.5 508 47.8
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 5.0e-121 438.7 382 59.9
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.5e-120 437.2 508 46.9
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.5e-120 437.2 508 46.9
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.3e-120 436.0 506 46.6
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 9.5e-120 434.5 512 48.4
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-119 433.7 485 48.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.0e-118 431.0 508 47.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.3e-118 429.9 504 46.4
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 6.8e-118 428.3 509 46.0
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 6.8e-118 428.3 506 46.8
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.5e-117 427.2 478 49.0
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.4e-117 425.6 507 46.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 5.7e-117 425.2 509 45.8
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 9.8e-117 424.5 509 45.4
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.7e-116 423.7 509 46.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 6.3e-116 421.8 507 46.4
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 8.3e-116 421.4 509 45.2
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-115 419.9 509 46.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.1e-115 419.5 509 45.4
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-115 419.1 507 46.2
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-115 419.1 507 46.2
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.0e-115 418.3 507 46.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-114 416.4 507 46.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.3e-113 413.3 483 48.9
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.5e-112 409.8 509 44.2
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.1e-111 406.8 508 45.5
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.8e-111 406.4 483 46.4
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 4.7e-111 405.6 505 44.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.7e-111 405.6 507 44.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.3e-110 403.3 504 43.8
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 4.9e-108 395.6 504 42.7
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 8.3e-108 394.8 504 43.5
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-107 394.4 504 42.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.4e-107 393.3 503 42.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 9.2e-107 391.3 504 42.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 6.0e-106 388.7 504 43.1
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-105 387.1 504 42.1
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.2e-103 380.9 509 41.8
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.6e-103 380.6 505 44.4
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-101 374.4 504 42.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 9.8e-101 371.3 501 43.1
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-99 366.3 483 42.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 9.2e-99 364.8 506 42.3
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.3e-97 360.9 492 41.3
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.3e-97 360.1 500 42.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 6.6e-97 358.6 492 42.5
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 6.6e-97 358.6 382 47.1
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.1e-96 357.8 514 39.3
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 5.6e-96 355.5 407 48.2
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-95 354.4 529 39.9
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.1e-95 353.6 434 47.7
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.7e-95 352.4 504 40.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 6.2e-95 352.1 525 41.1
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 6.8e-94 348.6 382 46.1
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-93 347.4 481 42.6
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.9e-88 330.5 469 42.4
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 8.9e-86 321.6 437 42.8
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 5.8e-85 318.9 397 45.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.3e-81 307.0 464 41.4
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 3.4e-77 293.1 297 53.5
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 7.6e-77 292.0 513 36.5
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.9e-76 290.0 409 40.3
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 3.0e-73 280.0 197 69.5
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 5.1e-73 279.3 197 69.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.2e-68 263.8 234 56.8
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.9e-64 250.8 350 40.9
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 3.5e-58 229.9 384 34.9
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.6e-55 221.1 391 34.5
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.5e-53 214.5 222 49.5
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-44 185.3 270 40.7
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.2e-44 184.1 191 49.2
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 4.6e-42 176.4 267 39.7
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 4.7e-34 149.8 112 59.8
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 9.7e-32 142.1 179 44.1
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 3.1e-30 137.1 199 39.7
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.3e-30 136.3 86 76.7
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.5e-27 127.5 79 68.4
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 7.2e-27 125.9 171 43.3
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.6e-26 123.6 109 56.0
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-25 122.1 281 32.0
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 6.3e-23 112.8 84 65.5
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.6e-21 108.2 197 35.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-21 107.5 226 32.7
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.2e-20 104.4 93 59.1
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-20 102.4 157 39.5
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-17 94.4 151 39.1
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-15 88.2 121 40.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 3.7e-15 87.0 121 40.5
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.4e-14 83.2 54 59.3
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.9e-13 79.7 80 53.8
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-12 79.0 118 38.1
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 5.0e-12 76.6 116 36.2
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 4.7e-10 70.1 53 58.5
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 6.1e-10 69.7 164 29.9
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.8e-09 68.2 101 39.6
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.8e-09 68.2 53 54.7
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-09 67.8 101 39.6
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-08 64.3 101 37.6
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.6e-08 64.3 105 36.2
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.7e-08 63.2 101 37.6
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.7e-08 63.2 116 33.6
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 7.5e-08 62.8 51 52.9
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.5e-08 62.8 116 33.6
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 4.9e-07 60.1 49 57.1
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 4.1e-06 57.0 45 55.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.0e-06 56.2 62 40.3
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 9.1e-06 55.8 60 51.7


User provided reference genes

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