Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 1.5e-141 506.1 250 100.0
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 2.9e-116 422.2 250 81.6
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 7.0e-115 417.5 250 80.0
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 4.3e-112 408.3 250 81.6
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 8.6e-105 384.0 253 77.1
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.5e-101 373.2 251 74.5
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.9e-99 366.3 257 71.6
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 1.9e-99 366.3 255 71.8
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 2.4e-99 365.9 248 71.8
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 3.2e-99 365.5 254 72.0
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 4.1e-99 365.2 255 71.4
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 9.2e-99 364.0 256 71.1
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.6e-98 363.2 250 71.2
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 2.1e-98 362.8 250 68.8
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 6.0e-98 361.3 250 70.8
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 8.6e-97 357.5 250 72.0
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 1.5e-96 356.7 250 69.6
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.5e-96 356.7 255 67.5
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 3.3e-96 355.5 257 69.6
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 3.3e-96 355.5 257 69.6
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 3.3e-96 355.5 255 67.5
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 7.3e-96 354.4 251 69.3
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.9e-94 347.4 253 69.6
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.5e-93 346.7 251 68.5
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.0e-93 346.3 253 69.6
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 2.0e-93 346.3 253 68.0
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.6e-93 345.9 253 69.2
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 4.4e-93 345.1 255 67.1
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 9.9e-93 344.0 215 76.3
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 1.3e-92 343.6 264 63.6
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.7e-92 343.2 253 68.4
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 6.4e-92 341.3 275 63.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 5.4e-91 338.2 250 67.2
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 2.7e-90 335.9 272 64.3
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.7e-90 335.9 280 60.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.5e-90 335.5 253 66.0
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 4.6e-90 335.1 331 55.3
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.0e-89 334.0 250 65.2
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 5.1e-89 331.6 234 68.8
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 8.6e-89 330.9 251 68.1
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 8.6e-89 330.9 228 72.8
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 2.5e-88 329.3 250 66.4
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 3.3e-88 328.9 232 69.8
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 6.2e-87 324.7 250 64.8
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 8.1e-87 324.3 231 68.8
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 8.1e-87 324.3 226 69.9
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.1e-86 323.9 253 64.4
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 2.4e-86 322.8 252 63.5
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.4e-86 322.8 231 68.8
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.1e-86 322.4 231 68.4
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.2e-86 321.6 253 64.0
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 6.9e-86 321.2 256 63.3
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.0e-85 319.7 231 68.0
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.6e-85 319.3 295 55.6
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 7.6e-85 317.8 247 64.4
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 9.9e-85 317.4 229 66.4
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 4.9e-84 315.1 235 67.7
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.4e-83 313.5 217 71.0
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 9.3e-83 310.8 243 63.8
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.2e-82 310.5 303 54.5
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.6e-82 310.1 243 64.2
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 3.5e-82 308.9 250 62.4
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 7.8e-82 307.8 250 62.0
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 7.8e-82 307.8 244 63.5
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.3e-81 307.0 221 67.0
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.7e-81 306.6 202 71.8
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 3.9e-81 305.4 232 62.9
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.1e-80 303.9 240 61.7
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 4.3e-80 302.0 203 73.4
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 1.3e-79 300.4 221 68.8
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 8.1e-79 297.7 242 62.8
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 8.1e-79 297.7 271 57.9
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 1.8e-78 296.6 248 62.9
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 3.1e-78 295.8 272 58.1
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 9.0e-78 294.3 200 70.5
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 1.2e-77 293.9 261 59.8
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.0e-77 293.1 250 60.0
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 3.4e-77 292.4 228 64.9
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 9.9e-77 290.8 241 62.7
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 4.9e-76 288.5 250 58.4
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 1.9e-75 286.6 246 60.6
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 2.4e-75 286.2 225 63.1
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.4e-75 286.2 225 63.1
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 2.4e-75 286.2 225 63.1
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 2.4e-75 286.2 225 63.1
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 1.6e-74 283.5 246 59.3
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 4.6e-74 282.0 228 62.3
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 3.0e-73 279.3 222 62.6
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 3.9e-73 278.9 229 62.0
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 1.5e-72 276.9 225 62.2
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 1.9e-72 276.6 252 57.9
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.3e-72 275.8 260 53.1
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 3.3e-72 275.8 223 61.0
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 5.6e-72 275.0 223 61.0
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 3.6e-71 272.3 285 49.8
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.8e-70 270.0 165 76.4
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 6.9e-70 268.1 223 61.0
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 2.6e-69 266.2 250 55.2
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 1.7e-68 263.5 199 64.8
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 2.2e-68 263.1 197 64.5
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 2.2e-68 263.1 250 56.0
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.8e-68 262.3 255 52.5
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.4e-67 260.4 250 53.2
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 2.7e-66 256.1 197 62.9
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 5.1e-65 251.9 255 53.3
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 4.3e-64 248.8 257 52.1
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 8.1e-63 244.6 257 52.5
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 4.0e-62 242.3 252 49.6
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.0e-57 227.6 252 48.8
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 2.5e-56 223.0 195 55.9
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 1.7e-52 210.3 259 46.7
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 3.9e-41 172.6 145 59.3
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 9.7e-40 167.9 210 41.9
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.1e-34 150.2 192 37.5
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 3.7e-31 139.4 107 64.5
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 6.1e-26 122.1 165 36.4
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 4.1e-22 109.4 180 34.4
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 5.9e-13 79.0 87 44.8


User provided reference genes

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