Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 1.7e-117 426.0 221 100.0
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 7.1e-103 377.5 221 88.2
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.6e-102 376.3 221 87.8
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.6e-102 376.3 221 87.8
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 4.6e-102 374.8 221 86.9
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 7.9e-102 374.0 219 87.7
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 1.8e-101 372.9 221 86.4
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 3.0e-101 372.1 221 86.9
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 3.9e-101 371.7 221 86.4
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 3.9e-101 371.7 221 86.4
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 6.7e-101 370.9 221 87.3
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 6.7e-101 370.9 221 86.9
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.1e-100 370.2 221 85.5
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.5e-100 369.8 221 87.3
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 1.5e-100 369.8 221 86.0
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.9e-100 369.4 221 86.9
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 2.5e-100 369.0 221 86.9
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.3e-100 368.6 221 86.9
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 3.3e-100 368.6 221 86.0
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.3e-100 368.2 221 86.0
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.3e-100 368.2 221 86.0
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-99 366.7 221 86.0
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.3e-99 366.7 221 85.5
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.1e-99 365.9 221 86.0
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.1e-99 365.9 221 86.0
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 2.1e-99 365.9 221 86.9
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.8e-99 365.5 221 86.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 2.8e-99 365.5 221 86.0
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 3.7e-99 365.2 221 86.4
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.7e-99 365.2 221 86.9
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 4.8e-99 364.8 221 85.5
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 6.2e-99 364.4 221 86.4
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 6.2e-99 364.4 221 86.0
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 8.1e-99 364.0 221 86.4
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.1e-99 364.0 221 86.0
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.4e-98 363.2 221 85.1
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.8e-98 362.8 221 84.6
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.8e-98 362.8 221 85.1
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.8e-98 362.8 221 86.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.4e-98 362.5 221 84.6
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 2.4e-98 362.5 221 86.0
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.4e-98 362.5 221 85.5
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.4e-98 362.5 221 85.1
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 3.1e-98 362.1 221 85.1
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 5.3e-98 361.3 221 82.8
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 5.3e-98 361.3 221 83.3
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 5.3e-98 361.3 221 83.3
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 5.3e-98 361.3 221 85.5
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 5.3e-98 361.3 221 84.2
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 6.9e-98 360.9 221 83.3
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 6.9e-98 360.9 221 83.3
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 6.9e-98 360.9 221 83.3
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 9.0e-98 360.5 221 82.8
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 9.0e-98 360.5 221 82.8
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 9.0e-98 360.5 221 85.5
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 9.0e-98 360.5 220 85.0
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.2e-97 360.1 221 82.4
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.2e-97 360.1 221 82.4
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.5e-97 359.8 221 82.4
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.5e-97 359.8 221 84.6
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.5e-97 359.8 220 85.0
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.6e-97 359.0 221 84.6
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 2.6e-97 359.0 221 84.6
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.4e-97 358.6 221 84.2
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 3.4e-97 358.6 221 83.7
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.8e-97 357.8 221 84.6
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 7.6e-97 357.5 221 81.4
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 7.6e-97 357.5 221 82.4
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.0e-96 357.1 221 83.3
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.0e-96 357.1 221 81.9
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.3e-96 356.7 221 81.0
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.3e-96 356.7 221 81.0
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.3e-96 356.7 221 84.2
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 1.3e-96 356.7 221 82.4
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.7e-96 356.3 221 81.9
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 1.7e-96 356.3 221 83.7
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.7e-96 356.3 221 84.2
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 81.0
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 81.0
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.2e-96 355.9 221 85.5
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 84.2
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.9e-96 355.5 225 83.6
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 83.3
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 83.3
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 81.9
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.9e-96 355.5 221 82.8
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.8e-96 355.1 220 83.6
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 4.9e-96 354.8 221 83.7
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 8.4e-96 354.0 221 82.8
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 8.4e-96 354.0 221 83.3
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 8.4e-96 354.0 222 83.8
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.4e-95 353.2 221 81.0
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.9e-95 352.8 220 82.7
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.5e-95 352.4 221 83.7
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 3.2e-95 352.1 221 82.4
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 4.2e-95 351.7 221 82.8
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 5.5e-95 351.3 221 81.0
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 7.1e-95 350.9 221 83.3
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 7.1e-95 350.9 221 82.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 2.1e-94 349.4 221 81.9
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 4.6e-94 348.2 221 81.9
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.3e-93 346.7 232 79.7
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.0e-93 345.5 221 81.9
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.9e-92 342.8 221 80.5
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 4.3e-92 341.7 226 79.2
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 5.7e-92 341.3 221 81.0
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.3e-91 340.1 221 81.9
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.6e-91 339.7 221 79.2
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.7e-91 338.6 221 79.6
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 6.3e-91 337.8 221 79.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 8.2e-91 337.4 221 79.2
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.4e-90 335.9 221 80.1
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 4.5e-89 331.6 221 76.0
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.1e-87 327.0 204 83.8
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 2.7e-86 322.4 220 77.3
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 7.9e-86 320.9 221 75.6
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.8e-85 319.7 223 74.9
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.8e-85 319.7 221 75.6
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 6.7e-85 317.8 221 77.4
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.9e-84 316.2 221 75.1
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 2.5e-84 315.8 221 76.9
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 2.5e-84 315.8 221 76.9
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 3.3e-84 315.5 219 74.9
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 7.4e-84 314.3 221 74.7
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 9.7e-84 313.9 221 74.7
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 6.3e-83 311.2 221 70.6
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.2e-78 297.0 221 72.9
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 7.9e-78 294.3 170 87.1
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 2.3e-77 292.7 221 71.5
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 1.1e-76 290.4 170 85.9
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.5e-76 290.0 281 60.1
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 6.3e-75 284.6 170 84.1
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 8.2e-75 284.3 221 71.5
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.1e-74 282.0 221 68.8
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 5.3e-74 281.6 221 70.6
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 6.9e-74 281.2 221 69.7
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.0e-73 279.6 221 70.1
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 3.4e-73 278.9 222 67.6
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 3.2e-71 272.3 203 73.9
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 7.9e-70 267.7 222 67.1
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.8e-66 256.5 185 76.8
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 1.2e-65 253.8 222 65.8
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.2e-65 253.8 170 77.1
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 5.9e-65 251.5 149 80.5
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.2e-64 249.6 358 45.8
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 3.7e-59 232.3 224 57.1
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 5.9e-57 224.9 238 54.2
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.9e-47 193.4 269 49.4
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 4.2e-47 192.2 135 80.0
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 9.5e-47 191.0 224 47.8
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.7e-46 189.5 113 79.6
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.7e-46 189.5 113 79.6
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 9.8e-44 181.0 217 49.3
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-42 177.2 135 73.3
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.0e-40 171.0 114 82.5
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 1.2e-38 164.1 83 90.4
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.4e-37 160.6 82 90.2
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.2e-36 157.5 84 83.3
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.3e-35 154.1 118 69.5
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 4.1e-34 149.1 101 83.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 4.1e-34 149.1 101 83.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 4.1e-34 149.1 101 83.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 4.1e-34 149.1 101 83.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 4.1e-34 149.1 101 83.2
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.7e-33 146.4 86 83.7
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 2.6e-28 129.8 71 78.9
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.9e-18 97.1 74 74.3
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.0e-17 92.0 68 75.0
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 7.8e-17 91.7 63 79.4
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 8.4e-11 71.6 39 79.5
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 3.2e-10 69.7 39 76.9
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 3.2e-10 69.7 50 68.0
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 3.2e-10 69.7 50 68.0
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 3.2e-10 69.7 50 68.0
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.2e-09 67.8 50 66.0


User provided reference genes

Program Settings