Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 0.0e+00 1363.2 963 100.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.6e-271 939.9 982 74.7
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.0e-230 804.3 992 70.1
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.9e-210 735.3 985 67.5
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.3e-206 723.4 847 69.3
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 6.7e-206 721.8 987 67.8
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 3.7e-204 716.1 965 65.2
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.2e-200 703.0 862 64.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.5e-194 684.1 871 69.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.7e-193 680.6 825 73.2
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 4.7e-191 672.5 875 63.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 5.2e-190 669.1 875 63.4
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.1e-189 667.9 875 65.4
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 8.2e-188 661.8 863 59.3
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 8.2e-188 661.8 981 63.2
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.4e-187 661.0 818 70.0
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.1e-187 659.8 862 65.0
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.3e-187 659.1 892 66.9
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 7.0e-187 658.7 932 58.7
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.0e-186 657.1 816 66.5
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.6e-186 656.8 869 70.9
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 5.9e-186 655.6 876 63.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.0e-185 654.8 873 64.5
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.0e-185 654.8 888 66.4
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-185 654.4 835 68.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.8e-185 652.9 834 69.4
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 3.8e-185 652.9 816 66.2
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 6.5e-185 652.1 854 68.1
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 8.5e-185 651.7 826 66.2
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.2e-183 647.9 821 71.4
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.0e-182 644.8 818 70.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-182 644.8 826 68.6
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.4e-182 644.4 820 72.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.8e-182 644.0 899 66.1
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.3e-182 643.7 818 69.9
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 4.0e-182 642.9 818 70.9
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 6.8e-182 642.1 885 66.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.5e-181 641.0 823 71.8
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.4e-181 639.8 830 70.2
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 7.5e-181 638.6 811 67.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.5e-181 638.6 818 68.5
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.3e-180 635.6 856 67.1
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.3e-180 635.6 818 71.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.3e-180 635.2 818 71.6
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.1e-179 634.8 824 69.5
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.1e-179 634.8 818 68.8
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.1e-179 634.8 852 66.2
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.4e-179 634.4 817 69.4
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.8e-179 634.0 814 71.7
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 5.4e-179 632.5 796 70.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 5.4e-179 632.5 817 70.7
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 5.4e-179 632.5 824 68.7
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 7.0e-179 632.1 832 64.8
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.6e-178 630.9 817 70.4
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.6e-178 630.9 818 64.1
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 3.5e-178 629.8 834 70.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 5.9e-178 629.0 817 70.6
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 7.7e-178 628.6 869 65.7
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.0e-177 628.2 816 69.7
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.7e-177 627.5 816 61.4
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 6.5e-177 625.5 797 71.4
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.5e-177 625.5 835 68.9
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.2e-175 621.3 823 70.0
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 8.0e-175 618.6 827 68.7
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.0e-174 618.2 832 70.2
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 5.2e-174 615.9 811 70.5
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 6.8e-174 615.5 818 66.1
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.6e-173 613.6 821 68.5
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.4e-173 613.2 821 68.5
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 7.5e-173 612.1 804 66.0
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.2e-172 610.5 820 69.5
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 8.3e-172 608.6 824 68.4
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.1e-171 606.3 830 57.1
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.4e-171 605.9 801 71.0
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.1e-171 605.1 808 63.6
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.1e-171 605.1 797 69.1
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-170 604.7 797 69.3
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.2e-170 604.7 820 67.2
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.6e-170 604.4 803 69.4
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 4.5e-170 602.8 820 68.8
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 7.7e-170 602.1 821 65.5
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.7e-169 600.9 795 70.1
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.9e-169 600.1 904 57.1
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 5.0e-169 599.4 883 62.3
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 8.6e-169 598.6 817 67.2
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 8.6e-169 598.6 817 68.8
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.5e-168 597.0 816 68.3
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 4.2e-168 596.3 869 56.7
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.5e-168 595.1 819 67.5
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.6e-167 594.3 795 68.4
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.1e-167 594.0 797 68.4
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 4.7e-167 592.8 823 67.4
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-166 591.3 787 64.5
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.8e-166 590.9 817 68.5
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.8e-166 590.9 862 59.5
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.3e-166 590.5 818 65.0
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.2e-166 589.3 813 67.4
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 5.2e-166 589.3 844 62.0
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.0e-165 587.4 817 66.8
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.4e-165 586.6 813 69.6
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.7e-165 585.9 820 68.2
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 9.8e-165 585.1 787 63.9
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 9.8e-165 585.1 787 63.9
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.7e-164 583.2 898 61.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.9e-164 582.8 865 65.5
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-162 577.8 817 67.7
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-162 577.8 847 65.9
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-162 577.8 847 65.9
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-162 577.8 817 67.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.3e-161 574.7 800 67.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-161 574.7 795 68.9
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.7e-161 574.3 817 67.7
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.9e-161 573.5 717 69.5
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.9e-160 570.9 817 64.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-159 568.2 824 61.7
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.1e-159 567.4 811 67.6
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.6e-159 566.6 824 56.8
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 4.0e-158 563.1 732 69.1
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.2e-157 561.6 817 65.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 3.5e-154 550.1 789 62.4
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-151 541.6 797 65.1
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-150 538.5 854 59.3
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.4e-149 533.1 791 61.6
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.9e-148 530.4 811 63.9
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 6.4e-148 529.3 827 58.5
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.4e-147 527.3 811 59.7
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 9.2e-147 525.4 798 60.5
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 9.2e-147 525.4 772 62.8
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.6e-146 524.6 792 56.9
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.0e-145 520.4 798 60.7
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.5e-144 517.3 789 63.1
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.5e-144 517.3 854 61.5
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 3.6e-143 513.5 772 53.0
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.3e-142 510.8 791 60.6
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.0e-137 495.4 742 61.5
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 8.6e-137 492.3 783 50.3
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.1e-136 491.9 814 61.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.4e-134 484.2 649 73.2
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.2e-133 481.9 755 56.8
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.0e-133 481.1 730 55.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.5e-130 470.3 652 66.7
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 7.9e-122 442.6 684 68.6
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.3e-121 441.8 912 50.8
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.6e-120 435.6 686 60.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.7e-116 424.9 917 47.8
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.4e-116 422.9 855 46.7
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.4e-115 421.8 788 53.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.7e-108 398.3 845 55.4
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.9e-107 394.8 646 73.5
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-106 392.1 655 69.5
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.0e-105 387.5 603 62.9
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.0e-101 374.8 946 44.7
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.7e-98 364.4 377 64.2
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.1e-96 359.0 1006 32.7
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.9e-92 344.4 949 48.2
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.4e-89 335.5 639 54.8
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.2e-85 322.4 497 47.3
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.4e-85 320.9 323 67.2
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 4.1e-78 297.4 646 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 5.9e-77 293.5 614 59.9
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 3.3e-72 277.7 480 45.2
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.9e-69 266.9 413 48.7
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 9.1e-62 243.0 318 75.5
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 2.9e-60 238.0 264 59.8
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 8.6e-52 209.9 189 58.2
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.0e-41 176.4 201 47.3
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 5.8e-40 170.6 221 44.3
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.6e-29 134.4 109 63.3
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-25 122.9 107 61.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 7.6e-24 117.1 91 61.5
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 3.8e-23 114.8 239 79.9
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 3.6e-18 98.2 74 64.9
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.6e-18 98.2 119 46.2
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.5e-16 92.8 66 72.7
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.6e-11 74.3 57 59.6
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.6e-10 72.8 165 31.5
SGA_v2.0_scaffold49G18355 Striga asiatica HOM05D003722 ORTHO05D050768 3.4e-08 65.1 31 100.0


User provided reference genes

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