Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold162G37895 Striga asiatica HOM05D004477 ORTHO05D005615 4.4e-104 381.3 197 100.0
SGA_v2.0_scaffold20G09066 Striga asiatica HOM05D004477 ORTHO05D005615 4.3e-59 231.9 152 85.5
SGA_v2.0_scaffold289G47250 Striga asiatica HOM05D004477 ORTHO05D005615 5.3e-25 118.6 63 95.2
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 1.2e-08 64.3 91 44.0
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 3.5e-08 62.8 55 63.6
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 3.5e-08 62.8 55 61.8
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 4.5e-08 62.4 55 61.8
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 4.5e-08 62.4 55 61.8
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 5.9e-08 62.0 55 61.8
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 7.7e-08 61.6 55 60.0
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 7.7e-08 61.6 55 60.0
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 7.7e-08 61.6 55 60.0
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 7.7e-08 61.6 55 60.0
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 7.7e-08 61.6 55 60.0
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 7.7e-08 61.6 55 60.0
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 1.0e-07 61.2 55 60.0
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 1.0e-07 61.2 55 60.0
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 1.0e-07 61.2 55 60.0
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 1.0e-07 61.2 55 60.0
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 1.0e-07 61.2 55 61.8
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 1.0e-07 61.2 55 60.0
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 1.3e-07 60.8 55 60.0
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 1.3e-07 60.8 55 60.0
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 1.3e-07 60.8 55 60.0
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 1.3e-07 60.8 55 60.0
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 1.3e-07 60.8 57 57.9
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 1.3e-07 60.8 55 60.0
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 1.7e-07 60.5 55 58.2
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 1.7e-07 60.5 55 58.2
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 1.7e-07 60.5 55 58.2
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 1.7e-07 60.5 55 58.2
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 2.2e-07 60.1 44 70.5
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.2e-07 60.1 44 70.5
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 2.2e-07 60.1 44 70.5
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 2.2e-07 60.1 55 60.0
SGA_v2.0_scaffold15G07263 Striga asiatica HOM05D004477 ORTHO05D005615 2.2e-07 60.1 37 83.8
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 2.2e-07 60.1 55 61.8
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 60.0
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 60.0
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Nn7g36505 Nelumbo nucifera HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 58.2
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 60.0
Solyc11g065960.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 60.0
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 60.0
PGSC0003DMG400000394 Solanum tuberosum HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 60.0
PGSC0003DMG400016389 Solanum tuberosum HOM05D004477 ORTHO05D005615 2.9e-07 59.7 55 60.0
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 3.8e-07 59.3 55 58.2
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 3.8e-07 59.3 55 58.2
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 3.8e-07 59.3 55 58.2
Lsat_1_v5_gn_5_69441 Lactuca sativa HOM05D004477 ORTHO05D005615 3.8e-07 59.3 55 58.2
Pp3c25_4340 Physcomitrium patens HOM05D004477 ORTHO05D005615 3.8e-07 59.3 55 58.2
Pp3c25_4350 Physcomitrium patens HOM05D004477 ORTHO05D005615 3.8e-07 59.3 55 58.2
Pp3c25_4370 Physcomitrium patens HOM05D004477 ORTHO05D005615 3.8e-07 59.3 55 58.2
TAR623G1431 Trochodendron aralioides HOM05D004477 ORTHO05D005615 3.8e-07 59.3 44 68.2
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 5.0e-07 58.9 54 59.3
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 5.0e-07 58.9 44 68.2
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 5.0e-07 58.9 44 68.2
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 5.0e-07 58.9 55 56.4
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 5.0e-07 58.9 55 58.2
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 5.0e-07 58.9 55 58.2
vmacro13733 Vaccinium macrocarpon HOM05D004477 ORTHO05D005615 5.0e-07 58.9 55 56.4
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 5.0e-07 58.9 55 56.4
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 6.5e-07 58.5 55 58.2
Nitab4.5_0021326g0010 Nicotiana tabacum HOM05D004477 ORTHO05D005615 6.5e-07 58.5 55 58.2
Psat4g000640 Pisum sativum HOM05D004477 ORTHO05D005615 1.1e-06 57.8 55 58.2
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 1.1e-06 57.8 55 58.2
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 1.1e-06 57.8 55 58.2
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 1.5e-06 57.4 55 56.4
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 1.5e-06 57.4 55 56.4
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 1.9e-06 57.0 44 65.9
TAR633G1412 Trochodendron aralioides HOM05D004477 ORTHO05D005615 1.9e-06 57.0 35 80.0
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 1.9e-06 57.0 55 58.2
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 2.5e-06 56.6 55 54.5
Lj7A582G32 Lonicera japonica HOM05D004477 ORTHO05D005615 2.5e-06 56.6 35 82.9
PGR031G2712 Punica granatum HOM05D004477 ORTHO05D005615 2.5e-06 56.6 44 63.6
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 3.2e-06 56.2 55 52.7
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 4.2e-06 55.8 44 65.9
Aqoxy7G00557 Aquilegia oxysepala HOM05D004477 ORTHO05D005615 5.5e-06 55.5 55 52.7
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 7.2e-06 55.1 44 65.9
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 7.2e-06 55.1 55 52.7
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 7.2e-06 55.1 55 52.7
Peaxi162Scf01810g00112 Petunia axillaris HOM05D004477 ORTHO05D005615 7.2e-06 55.1 35 80.0
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 9.4e-06 54.7 44 65.9
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 9.4e-06 54.7 55 52.7
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 9.4e-06 54.7 44 65.9


User provided reference genes

Program Settings