Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 3.8e-151 538.1 263 100.0
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 3.1e-129 465.3 263 87.1
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 1.5e-128 463.0 263 87.5
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 1.5e-128 463.0 262 87.8
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 1.5e-128 463.0 262 87.8
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 3.3e-123 445.3 263 83.3
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 3.3e-123 445.3 263 83.3
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 7.4e-123 444.1 263 82.9
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 9.6e-123 443.7 262 82.8
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.3e-122 443.4 263 82.9
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.6e-122 443.0 265 83.4
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.1e-122 442.6 263 82.5
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 4.8e-122 441.4 263 82.1
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 4.8e-122 441.4 263 81.7
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 6.2e-122 441.0 263 82.5
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 6.2e-122 441.0 263 82.1
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 1.8e-121 439.5 263 82.5
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.4e-121 439.1 263 82.1
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 2.4e-121 439.1 263 81.7
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 6.9e-121 437.6 263 81.7
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 2.6e-120 435.6 263 80.6
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 4.5e-120 434.9 263 80.2
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 5.8e-120 434.5 263 81.0
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 7.6e-120 434.1 263 81.4
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 7.6e-120 434.1 262 80.2
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 1.0e-119 433.7 263 80.6
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 1.3e-119 433.3 263 80.6
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 2.2e-119 432.6 255 82.7
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 4.9e-119 431.4 262 82.1
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.1e-118 430.3 262 81.7
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.4e-118 429.9 261 80.5
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 1.4e-118 429.9 262 81.7
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.4e-118 429.9 263 81.0
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.4e-118 429.9 263 79.5
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.4e-118 429.9 263 81.4
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 1.9e-118 429.5 262 79.8
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 2.5e-118 429.1 260 80.0
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 3.2e-118 428.7 264 81.1
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 4.2e-118 428.3 255 82.0
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 9.3e-118 427.2 263 80.6
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 2.7e-117 425.6 263 79.8
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 3.5e-117 425.2 263 80.6
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 3.5e-117 425.2 263 80.6
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 6.0e-117 424.5 263 78.7
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.0e-116 423.7 263 79.1
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.0e-116 423.7 263 79.1
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 1.0e-116 423.7 263 79.1
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 1.3e-116 423.3 263 79.5
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 1.3e-116 423.3 263 79.5
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 1.3e-116 423.3 308 70.8
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.8e-116 422.9 261 80.1
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 2.3e-116 422.5 263 79.1
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 2.3e-116 422.5 263 81.0
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 3.9e-116 421.8 263 77.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 3.9e-116 421.8 263 78.3
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 5.1e-116 421.4 263 79.5
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 5.1e-116 421.4 263 79.5
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 5.1e-116 421.4 263 79.5
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 6.7e-116 421.0 263 77.9
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.9e-115 419.5 277 75.1
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.9e-115 419.5 264 78.8
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 2.5e-115 419.1 263 77.9
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 4.3e-115 418.3 263 77.6
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 5.7e-115 417.9 263 79.1
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 1.6e-114 416.4 263 76.8
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 1.6e-114 416.4 263 77.2
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 1.6e-114 416.4 263 77.2
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 1.6e-114 416.4 263 77.2
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 1.6e-114 416.4 263 77.2
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 1.6e-114 416.4 263 77.2
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 3.7e-114 415.2 263 77.6
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 3.7e-114 415.2 263 77.6
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 3.7e-114 415.2 263 77.6
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 4.8e-114 414.8 277 74.4
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 6.3e-114 414.5 263 76.4
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 6.3e-114 414.5 263 76.8
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 6.3e-114 414.5 263 76.8
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.2e-114 414.1 263 78.7
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.2e-114 414.1 263 79.1
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 3.1e-113 412.1 263 76.4
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 3.1e-113 412.1 263 77.2
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.3e-113 411.4 263 77.2
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 2.0e-112 409.5 263 75.7
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 2.0e-112 409.5 256 77.7
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 4.5e-112 408.3 263 75.7
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 8.5e-111 404.1 263 75.3
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 9.3e-110 400.6 263 75.3
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 4.6e-109 398.3 236 83.9
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 3.0e-108 395.6 263 75.7
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 5.1e-108 394.8 261 73.9
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 3.3e-107 392.1 260 75.0
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 9.7e-107 390.6 259 73.7
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 1.3e-103 380.2 220 82.7
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 2.2e-103 379.4 263 73.8
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.1e-102 377.1 287 69.7
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 2.5e-102 375.9 263 70.3
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.6e-101 372.1 223 82.1
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.3e-100 369.4 256 71.1
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 3.7e-98 362.1 263 71.5
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.8e-97 359.8 263 70.0
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 3.8e-95 352.1 220 77.7
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 4.2e-94 348.6 237 73.0
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 3.0e-92 342.4 262 64.9
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 7.7e-88 327.8 253 66.4
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 4.2e-86 322.0 257 64.6
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 7.2e-86 321.2 204 78.4
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.4e-83 312.0 209 73.7
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 4.8e-82 308.5 256 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 3.8e-79 298.9 257 61.1
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 7.2e-70 268.1 154 81.8
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 5.2e-68 261.9 165 76.4
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 4.4e-67 258.8 176 71.6
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 4.3e-62 242.3 142 81.0
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 8.9e-60 234.6 138 84.8
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 9.2e-57 224.6 260 49.2
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 1.7e-55 220.3 253 45.8
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 5.6e-54 215.3 135 76.3
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 2.9e-50 203.0 204 55.9
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.6e-47 191.8 118 82.2
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.5e-46 190.7 274 40.5
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 3.3e-46 189.5 114 78.9
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 4.3e-46 189.1 102 89.2
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.2e-45 187.6 122 73.8
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 6.2e-45 185.3 162 58.6
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 8.1e-45 184.9 263 44.5
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 7.5e-43 178.3 102 84.3
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.3e-39 167.5 102 80.4
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 1.1e-38 164.5 102 77.5
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.5e-38 164.1 104 77.9
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 7.8e-32 141.7 116 62.9
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.3e-31 141.0 97 68.0
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 3.4e-27 126.3 79 83.5
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.8e-21 106.7 102 54.9
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 3.6e-21 106.3 60 85.0
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.5e-19 100.9 102 52.9
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.5e-14 84.3 55 72.7
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 2.4e-12 77.0 60 66.7
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 9.3e-09 65.1 40 82.5


User provided reference genes

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