Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.2e-144 516.5 267 100.0
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.2e-59 234.2 202 67.8
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.2e-49 199.5 219 55.3
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 9.7e-46 188.0 221 53.8
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.4e-43 179.5 209 54.5
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.5e-41 173.3 208 52.4
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.4e-41 171.4 206 53.4
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 2.7e-40 169.9 201 52.7
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.6e-40 169.5 213 51.6
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.1e-38 164.5 205 49.8
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.0e-38 163.7 196 54.1
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.8e-37 159.1 196 50.5
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.8e-36 157.1 205 50.2
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 5.3e-36 155.6 207 47.8
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 6.9e-36 155.2 206 50.5
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.1e-36 154.8 205 49.3
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.2e-35 154.5 210 46.2
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.5e-35 154.1 208 47.1
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.5e-35 154.1 215 47.0
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 2.6e-35 153.3 205 49.8
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.5e-35 152.5 190 50.0
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 5.9e-35 152.1 128 69.5
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.3e-34 151.0 213 48.8
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.2e-34 150.2 209 47.8
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.9e-34 149.8 190 49.5
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 2.9e-34 149.8 192 48.4
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.8e-34 149.4 191 50.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.4e-33 147.5 188 47.9
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.9e-33 147.1 206 47.6
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 4.2e-33 146.0 204 48.0
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.2e-33 146.0 190 51.1
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 4.2e-33 146.0 207 47.8
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 5.5e-33 145.6 188 49.5
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 5.5e-33 145.6 190 48.9
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 7.2e-33 145.2 190 50.0
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 9.4e-33 144.8 194 50.5
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 9.4e-33 144.8 196 46.4
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 9.4e-33 144.8 196 46.4
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.2e-32 144.4 191 49.2
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.2e-32 144.4 203 47.8
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.6e-32 144.1 190 49.5
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.6e-32 144.1 207 47.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 3.6e-32 142.9 194 50.5
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 4.7e-32 142.5 206 49.0
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-31 141.4 190 50.5
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.4e-31 141.0 190 48.4
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.8e-31 140.6 191 48.7
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.8e-31 140.6 183 50.3
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.8e-31 140.6 190 47.4
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 3.0e-31 139.8 191 48.7
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 3.9e-31 139.4 196 46.9
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 6.7e-31 138.7 204 44.6
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.5e-30 137.5 194 49.0
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.6e-30 136.7 211 46.4
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 3.3e-30 136.3 215 44.7
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 4.4e-30 136.0 193 47.2
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 7.4e-30 135.2 193 46.1
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 9.7e-30 134.8 174 50.0
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.3e-29 134.4 202 45.0
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.7e-29 134.0 194 46.4
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 3.7e-29 132.9 179 49.2
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 8.2e-29 131.7 183 48.1
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 8.2e-29 131.7 183 48.1
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 8.2e-29 131.7 204 44.6
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.1e-28 131.3 185 47.0
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.1e-28 131.3 195 44.6
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.6e-27 127.5 205 42.9
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 2.6e-27 126.7 211 43.1
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 5.9e-27 125.6 190 47.4
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 1.0e-26 124.8 180 45.6
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.7e-26 124.0 248 39.9
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.9e-26 123.2 187 43.3
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 5.0e-26 122.5 192 45.8
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.0e-26 122.5 127 54.3
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.1e-25 121.3 202 44.1
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.9e-25 120.6 186 45.2
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.5e-25 120.2 185 44.3
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 3.2e-25 119.8 203 41.9
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 3.2e-25 119.8 198 41.4
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 5.5e-25 119.0 194 43.3
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 7.2e-25 118.6 154 49.4
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.4e-25 118.2 194 43.3
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 4.7e-24 115.9 200 41.5
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.0e-23 114.8 227 39.6
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 3.0e-23 113.2 201 42.8
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.0e-23 113.2 190 43.7
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.0e-23 113.2 193 42.0
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 4.0e-23 112.8 207 39.6
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 4.0e-23 112.8 206 39.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 8.8e-23 111.7 240 39.6
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-22 110.2 183 44.8
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 5.7e-22 109.0 186 40.3
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 9.7e-22 108.2 177 44.1
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 9.7e-22 108.2 177 44.1
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 9.7e-22 108.2 201 40.8
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 9.7e-22 108.2 203 41.4
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.3e-21 107.8 146 49.3
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.7e-21 107.5 201 41.3
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.7e-21 107.5 178 43.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.8e-21 105.9 226 36.7
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 8.2e-21 105.1 192 41.1
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.8e-20 104.0 110 53.6
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 1.8e-20 104.0 192 39.6
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 2.4e-20 103.6 198 41.4
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 5.3e-20 102.4 189 38.6
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.0e-19 100.5 192 38.0
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 2.9e-18 96.7 115 52.2
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.9e-18 96.7 181 41.4
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.0e-18 95.9 193 39.4
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 6.5e-18 95.5 139 46.8
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.5e-18 95.5 182 40.7
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 6.5e-18 95.5 126 45.2
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 8.5e-18 95.1 193 39.4
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.5e-17 94.4 115 51.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.5e-17 93.6 197 35.0
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 3.2e-17 93.2 83 59.0
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.2e-17 93.2 193 38.9
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 3.2e-17 93.2 197 38.1
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 3.2e-17 93.2 193 37.3
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 7.2e-17 92.0 203 36.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 6.1e-16 89.0 138 43.5
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.0e-15 88.2 141 41.8
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 2.3e-15 87.0 153 42.5
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.3e-15 87.0 164 39.6
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.0e-14 84.0 193 35.2
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 4.4e-14 82.8 111 45.0
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 4.4e-14 82.8 95 58.9
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.8e-13 80.1 149 38.9
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.8e-13 80.1 56 73.2
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.5e-11 73.2 129 40.3
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 7.7e-11 72.0 79 53.2
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-10 70.5 65 60.0
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 2.2e-10 70.5 86 52.3
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.5e-10 68.9 58 65.5
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.5e-10 68.9 58 65.5
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.5e-10 68.9 58 65.5
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.1e-09 68.2 87 49.4
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.1e-09 68.2 109 38.5
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 2.5e-09 67.0 151 35.1
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.2e-08 64.7 132 37.9
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.2e-08 64.7 42 73.8
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.6e-08 64.3 56 64.3
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 1.4e-07 61.2 93 47.3
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 2.3e-07 60.5 95 43.2
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.2e-07 59.3 72 52.8
unitig_0.g1072 Utricularia gibba HOM05D004927 ORTHO05D005798 7.5e-06 55.5 61 57.4


User provided reference genes

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