Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 0.0e+00 1605.5 816 100.0
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 0.0e+00 1229.2 758 82.3
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 0.0e+00 1177.2 764 78.3
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 0.0e+00 1132.9 746 77.9
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 0.0e+00 1085.5 760 72.5
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.2e-309 1066.2 758 72.7
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 3.6e-309 1064.7 758 72.8
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 7.5e-307 1057.0 750 72.3
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.7e-306 1055.8 757 71.9
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 7.0e-305 1050.4 761 70.7
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 9.1e-305 1050.0 783 70.4
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.0e-303 1046.6 759 71.1
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.7e-303 1045.8 773 70.4
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 8.5e-303 1043.5 750 71.3
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 3.2e-302 1041.6 750 71.3
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 9.4e-302 1040.0 750 70.8
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 3.6e-301 1038.1 751 70.3
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 6.1e-301 1037.3 753 70.9
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.5e-299 1032.7 760 69.9
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 4.8e-298 1027.7 759 68.4
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 6.3e-298 1027.3 761 69.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.4e-297 1026.2 759 68.6
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.8e-297 1025.8 748 71.7
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 3.1e-297 1025.0 749 70.1
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.6e-296 1022.7 728 72.1
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 4.5e-296 1021.1 749 69.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 5.9e-296 1020.8 755 69.4
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.3e-295 1019.6 758 68.2
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 1.3e-295 1019.6 776 69.6
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.2e-295 1018.8 759 68.0
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 2.9e-295 1018.5 759 68.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 3.8e-295 1018.1 756 68.9
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 6.5e-295 1017.3 759 69.4
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.5e-295 1016.9 764 70.3
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.1e-294 1016.5 758 67.9
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.1e-294 1016.5 772 67.5
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.5e-294 1015.4 776 69.3
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 2.7e-293 1011.9 761 68.9
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 4.0e-292 1008.1 759 67.3
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 8.8e-292 1006.9 760 68.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 8.8e-292 1006.9 749 68.8
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.2e-291 1006.5 760 68.0
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.0e-291 1005.7 760 67.9
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.6e-291 1005.4 756 68.7
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 7.5e-291 1003.8 753 67.3
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.1e-289 1000.0 758 68.5
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.1e-289 1000.0 758 68.1
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 3.1e-289 998.4 745 68.6
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 7.0e-289 997.3 749 67.7
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 7.0e-289 997.3 753 68.5
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.0e-288 995.7 754 68.3
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 5.9e-288 994.2 750 69.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 5.9e-288 994.2 755 67.5
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 5.9e-288 994.2 752 68.2
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.0e-287 993.4 764 67.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.3e-287 993.0 763 67.9
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.9e-287 991.9 765 68.5
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 6.1e-285 984.2 756 68.1
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.4e-284 983.0 749 67.7
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 2.3e-284 982.2 756 68.3
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.0e-284 981.9 759 66.7
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 4.0e-284 981.5 755 65.8
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 6.8e-284 980.7 757 67.1
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 7.5e-283 977.2 772 64.6
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.7e-282 976.1 758 67.7
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 8.3e-282 973.8 756 68.0
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.4e-281 972.2 748 65.9
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.0e-280 969.1 753 65.5
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.1e-278 963.4 748 65.4
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 7.3e-278 960.7 756 66.7
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 2.3e-276 955.7 754 65.5
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 4.0e-276 954.9 757 65.1
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 4.0e-276 954.9 753 65.3
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.5e-275 953.0 766 65.9
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 3.7e-274 948.3 754 65.9
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.6e-272 941.4 751 64.6
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 6.6e-271 937.6 751 65.4
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 2.5e-270 935.6 762 63.6
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 7.3e-270 934.1 751 64.0
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.5e-267 926.4 764 63.6
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.5e-267 926.4 764 63.6
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.9e-266 921.4 764 63.2
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.1e-265 920.2 763 62.5
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-265 919.8 755 62.8
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.4e-265 919.8 755 62.8
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 3.2e-265 918.7 704 67.8
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-264 916.8 764 63.0
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.2e-264 916.8 764 63.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 3.5e-264 915.2 783 61.7
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 7.8e-264 914.1 755 62.3
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 7.8e-264 914.1 755 62.3
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.2e-259 900.2 760 64.6
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 2.7e-256 889.0 753 61.4
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 3.0e-255 885.6 747 62.4
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 6.2e-253 877.9 726 63.5
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 5.8e-251 871.3 624 69.7
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 7.6e-251 870.9 761 60.1
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.4e-249 866.7 748 61.2
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.1e-240 836.3 753 57.6
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.3e-239 833.6 660 64.4
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 3.9e-239 832.0 764 57.9
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 3.6e-237 825.5 766 57.0
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 3.4e-235 818.9 776 55.8
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 7.4e-230 801.2 824 54.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.0e-226 790.8 755 56.3
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.6e-224 783.5 756 56.5
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.6e-224 783.5 756 56.5
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.9e-222 776.5 755 55.6
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.9e-222 776.5 647 62.0
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 4.3e-222 775.4 758 55.1
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 3.9e-215 752.3 735 55.4
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.3e-213 747.3 528 71.4
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.9e-207 725.7 536 68.5
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 4.4e-206 722.2 533 69.8
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.4e-206 722.2 758 53.4
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 4.8e-205 718.8 529 69.4
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.0e-203 713.4 731 53.2
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 5.2e-199 698.7 766 50.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 3.1e-196 689.5 765 49.5
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.3e-191 673.3 763 49.3
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.5e-185 653.3 536 61.9
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.7e-182 642.1 747 48.1
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.1e-172 609.8 756 48.1
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.9e-157 560.1 610 50.2
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 6.2e-152 542.3 391 70.8
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 4.2e-132 476.5 399 60.9
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.2e-118 431.8 362 62.7
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.8e-111 407.9 747 34.9
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 6.3e-104 382.9 491 47.5
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 9.7e-81 305.8 864 29.2
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 7.7e-78 296.2 762 28.6
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.1e-76 292.4 346 51.2
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.4e-74 285.4 216 66.7
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.1e-63 247.3 520 35.4
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.5e-54 217.2 223 56.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-41 174.5 194 50.0
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.9e-39 168.7 151 57.0
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 8.1e-35 153.3 108 71.3
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 4.1e-31 141.0 102 68.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.3e-29 135.2 136 52.9
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.9e-29 134.4 93 73.1
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.5e-28 132.5 126 59.5
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 8.1e-27 126.7 257 36.6
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.0e-26 124.4 81 76.5
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.7e-24 119.0 227 41.4
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.4e-23 115.9 140 47.9
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.1e-22 112.1 81 70.4
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 9.6e-20 103.2 335 26.9
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.2e-19 102.8 92 58.7
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.4e-18 99.4 93 54.8
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 9.0e-18 96.7 124 46.0
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-17 96.3 94 51.1
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.1e-11 75.5 65 56.9
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.4e-10 72.0 56 67.9
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.7e-08 65.9 79 46.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.9e-07 62.4 63 49.2
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.4e-07 62.0 65 46.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.4e-07 62.0 65 46.2
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 2.4e-07 62.0 101 37.6
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 1.6e-06 59.3 65 44.6


User provided reference genes

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