Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 5.5e-158 560.8 269 100.0
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 3.1e-36 156.4 153 52.9
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 2.3e-34 150.2 141 52.5
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 4.5e-27 125.9 146 53.4
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.7e-26 124.0 156 42.3
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 5.0e-26 122.5 165 46.1
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 1.1e-25 121.3 149 45.6
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.5e-25 120.9 171 41.5
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.6e-24 117.5 161 46.0
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.7e-24 115.9 144 44.4
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 4.0e-23 112.8 163 41.1
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.2e-23 112.5 143 46.2
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.2e-21 107.1 152 42.8
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.2e-21 107.1 142 41.5
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.2e-21 107.1 163 41.1
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 2.2e-21 107.1 158 39.2
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.7e-21 106.3 150 40.7
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.7e-21 106.3 150 40.7
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.4e-20 104.4 123 44.7
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 1.8e-20 104.0 165 40.0
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.8e-20 104.0 139 41.0
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.4e-20 103.6 145 42.1
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.2e-20 103.2 150 40.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.0e-20 102.1 179 36.9
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.0e-20 102.1 143 42.7
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 1.2e-19 101.3 137 41.6
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.6e-19 100.9 154 40.9
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-19 100.1 145 42.1
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.0e-18 98.2 145 40.7
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.3e-18 97.8 150 36.7
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.3e-18 97.8 145 41.4
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.7e-18 97.4 137 43.8
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 2.3e-18 97.1 159 38.4
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 5.0e-18 95.9 159 37.7
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 8.6e-18 95.1 164 39.6
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 8.6e-18 95.1 160 37.5
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.9e-17 94.0 128 42.2
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 5.6e-17 92.4 143 40.6
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 9.5e-17 91.7 176 35.8
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.6e-16 90.9 155 38.7
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 2.1e-16 90.5 156 39.7
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 4.7e-16 89.4 156 36.5
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 8.0e-16 88.6 140 38.6
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 8.0e-16 88.6 151 38.4
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.1e-15 88.2 147 37.4
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.8e-15 87.4 162 36.4
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.8e-15 87.4 164 35.4
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 5.2e-15 85.9 145 40.7
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 5.2e-15 85.9 141 39.7
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.8e-15 85.5 135 41.5
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 6.8e-15 85.5 177 33.9
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-14 84.7 151 36.4
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 1.2e-14 84.7 157 35.0
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-14 84.3 144 37.5
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.0e-14 84.0 148 37.8
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.6e-14 83.6 177 32.8
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-14 83.6 135 40.7
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-14 83.6 135 41.5
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.4e-14 83.2 145 36.6
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.5e-14 82.0 144 36.8
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.3e-13 81.3 177 32.2
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.7e-13 80.9 178 34.8
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 2.2e-13 80.5 95 44.2
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 2.2e-13 80.5 139 38.1
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.9e-13 80.1 176 32.4
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.7e-13 79.7 178 34.3
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 4.9e-13 79.3 142 38.0
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 4.9e-13 79.3 146 35.6
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 6.4e-13 79.0 146 39.0
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.3e-13 78.6 146 37.0
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-12 77.8 138 37.7
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.2e-12 76.6 98 42.9
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.1e-12 76.3 91 39.6
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 7.0e-12 75.5 159 34.6
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 7.0e-12 75.5 158 38.6
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 9.2e-12 75.1 146 34.2
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-11 74.7 138 35.5
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 2.0e-11 73.9 158 31.6
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 2.0e-11 73.9 151 34.4
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 6.0e-11 72.4 149 33.6
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.7e-10 70.9 146 33.6
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 2.3e-10 70.5 151 35.1
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 3.0e-10 70.1 145 33.1
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 3.9e-10 69.7 159 34.6
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.9e-10 69.7 98 40.8
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.9e-10 69.7 164 34.1
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 6.6e-10 68.9 175 30.9
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 6.6e-10 68.9 159 34.0
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 8.6e-10 68.6 150 32.0
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 8.6e-10 68.6 137 35.8
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.5e-09 67.8 145 35.2
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.5e-09 67.8 148 33.1
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.9e-09 67.4 155 35.5
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.5e-09 67.0 137 36.5
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.3e-09 66.6 136 33.1
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 3.3e-09 66.6 135 34.1
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.3e-09 66.2 138 35.5
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.6e-09 65.9 149 32.9
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 5.6e-09 65.9 114 36.8
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 5.6e-09 65.9 146 32.9
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 7.3e-09 65.5 153 30.7
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 7.3e-09 65.5 140 35.0
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 7.3e-09 65.5 134 33.6
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 7.3e-09 65.5 149 32.2
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.2e-08 64.7 138 36.2
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 1.6e-08 64.3 124 35.5
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.6e-08 64.3 130 36.9
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.8e-08 63.5 145 34.5
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.8e-08 63.5 129 32.6
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 2.8e-08 63.5 137 34.3
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 2.8e-08 63.5 152 33.6
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.6e-08 63.2 124 36.3
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.6e-08 63.2 124 36.3
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 4.7e-08 62.8 129 34.1
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 6.2e-08 62.4 129 34.9
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 6.2e-08 62.4 144 31.2
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 8.1e-08 62.0 175 30.3
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.1e-07 61.6 150 29.3
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 1.4e-07 61.2 128 35.2
HPP92_026659 Vanilla planifolia HOM05D066124 ORTHO05D051582 2.3e-07 60.5 131 34.4
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 3.1e-07 60.1 86 40.7
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 4.0e-07 59.7 115 36.5
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 4.0e-07 59.7 138 32.6
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 5.2e-07 59.3 141 34.0
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 8.9e-07 58.5 129 32.6
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 8.9e-07 58.5 137 34.3
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.2e-06 58.2 171 29.2
HPP92_015703 Vanilla planifolia HOM05D066124 ORTHO05D051582 2.6e-06 57.0 110 32.7
Lj5g0011909 Lotus japonicus HOM05D014755 ORTHO05D005146 4.4e-06 56.2 115 36.5
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 7.5e-06 55.5 85 42.4


User provided reference genes

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