Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07485 Striga asiatica HOM05D000942 ORTHO05D405992 6.5e-122 440.7 211 100.0
SGA_v2.0_scaffold144G35972 Striga asiatica HOM05D000942 ORTHO05D012836 3.9e-34 149.1 107 72.0
SGA_v2.0_scaffold136G35036 Striga asiatica HOM05D000942 ORTHO05D405555 1.3e-21 107.5 127 50.4
SGA_v2.0_scaffold139G35426 Striga asiatica HOM05D000942 ORTHO05D404598 4.5e-14 82.4 43 86.0
SGA_v2.0_scaffold104G30255 Striga asiatica HOM05D000942 ORTHO05D406017 1.0e-13 81.3 69 59.4
SGA_v2.0_scaffold64G21998 Striga asiatica HOM05D000714 ORTHO05D399418 3.0e-10 69.7 87 47.1
SGA_v2.0_scaffold147G36294 Striga asiatica HOM05D000714 ORTHO05D000544 1.2e-09 67.8 40 82.5
Sabra06G0035100 Salix brachista HOM05D000942 ORTHO05D000918 3.4e-09 66.2 56 53.6
CsaV3_4G011660 Cucumis sativus L. HOM05D000942 ORTHO05D000918 1.3e-08 64.3 37 78.4
Sed0023835 Sechium edule HOM05D000942 ORTHO05D000918 4.8e-08 62.4 37 75.7
RcHm_v2.0_Chr3g0482581 Rosa chinensis HOM05D000942 ORTHO05D000918 6.3e-08 62.0 37 75.7
MELO3C023146.2 Cucumis melo HOM05D000942 ORTHO05D000918 8.3e-08 61.6 37 75.7
Sed0008667 Sechium edule HOM05D000942 ORTHO05D000918 8.3e-08 61.6 37 75.7
ClCG04G000160 Citrullus lanatus HOM05D000942 ORTHO05D000918 1.1e-07 61.2 37 75.7
ClCG10G017080 Citrullus lanatus HOM05D000942 ORTHO05D000918 1.1e-07 61.2 37 73.0
Cc06_g17590 Coffea canephora HOM05D000942 ORTHO05D000918 1.4e-07 60.8 31 80.6
TAR623G1412 Trochodendron aralioides HOM05D000942 ORTHO05D000918 1.4e-07 60.8 33 75.8
MELO3C009676.2 Cucumis melo HOM05D000942 ORTHO05D000918 1.8e-07 60.5 37 70.3
CsaV3_3G039310 Cucumis sativus L. HOM05D000942 ORTHO05D000918 1.8e-07 60.5 37 70.3
Peaxi162Scf00130g00011 Petunia axillaris HOM05D000942 ORTHO05D000918 1.8e-07 60.5 81 40.7
CARHR136830 Cardamine hirsuta HOM05D000942 ORTHO05D000918 2.4e-07 60.1 45 62.2
Sp5g05190 Schrenkiella parvula HOM05D000942 ORTHO05D000918 2.4e-07 60.1 31 77.4
Dinv12488 Davidia involucrata HOM05D000942 ORTHO05D000918 3.1e-07 59.7 37 73.0
Sed0027707 Sechium edule HOM05D000942 ORTHO05D000918 3.1e-07 59.7 37 73.0
Carub.0005s2425 Capsella rubella HOM05D000942 ORTHO05D000918 4.1e-07 59.3 37 70.3
Dinv39611 Davidia involucrata HOM05D000942 ORTHO05D000918 4.1e-07 59.3 99 36.4
HanXRQChr05g0131871 Helianthus annuus HOM05D000942 ORTHO05D000918 4.1e-07 59.3 31 80.6
HanXRQChr10g0283331 Helianthus annuus HOM05D000942 ORTHO05D000918 4.1e-07 59.3 31 80.6
Lj2A385T27 Lonicera japonica HOM05D000942 ORTHO05D000918 4.1e-07 59.3 31 80.6
VMungo1383G2361 Vigna mungo HOM05D000942 ORTHO05D000918 4.1e-07 59.3 101 36.6
AT3G57410 Arabidopsis thaliana HOM05D000942 ORTHO05D000918 5.4e-07 58.9 37 67.6
MD12G1074400 Malus domestica HOM05D000942 ORTHO05D000918 5.4e-07 58.9 37 73.0
MD14G1072600 Malus domestica HOM05D000942 ORTHO05D000918 5.4e-07 58.9 37 73.0
Prupe.7G059400 Prunus persica HOM05D000942 ORTHO05D000918 5.4e-07 58.9 37 73.0
SGA_v2.0_scaffold105G30408 Striga asiatica HOM05D000942 ORTHO05D000918 5.4e-07 58.9 37 70.3
ATR0626G392 Amborella trichopoda HOM05D000942 ORTHO05D000918 7.0e-07 58.5 31 77.4
Ca_08451_v3 Cicer arietinum L. HOM05D000942 ORTHO05D000918 7.0e-07 58.5 40 67.5
Ca_08454_v3 Cicer arietinum L. HOM05D000942 ORTHO05D000918 7.0e-07 58.5 40 67.5
FvH4_6g23900 Fragaria vesca HOM05D000942 ORTHO05D000918 7.0e-07 58.5 37 73.0
FAN05G5557 Fragaria x ananassa HOM05D000942 ORTHO05D000918 7.0e-07 58.5 37 73.0
FAN14G0021 Fragaria x ananassa HOM05D000942 ORTHO05D000918 7.0e-07 58.5 37 73.0
Peaxi162Scf00109g00515 Petunia axillaris HOM05D000942 ORTHO05D000918 7.0e-07 58.5 37 70.3
Potri.006G050200 Populus trichocarpa HOM05D000942 ORTHO05D000918 7.0e-07 58.5 37 70.3
Thecc.05G152900 Theobroma cacao HOM05D000942 ORTHO05D000918 7.0e-07 58.5 70 48.6
unitig_748.g7234 Utricularia gibba HOM05D000942 ORTHO05D000918 7.0e-07 58.5 31 77.4
arahy.Tifrunner.gnm1.ann1.4Z5MSS Arachis hypogaea HOM05D000942 ORTHO05D000918 9.1e-07 58.2 31 77.4
arahy.Tifrunner.gnm1.ann1.JJF32N Arachis hypogaea HOM05D000942 ORTHO05D000918 9.1e-07 58.2 31 77.4
CSS0004063 Camellia sinensis var. sinensis HOM05D000942 ORTHO05D000918 9.1e-07 58.2 45 55.6
Carub.0004s2402 Capsella rubella HOM05D000942 ORTHO05D000918 9.1e-07 58.2 45 60.0
Haze_19851 Corylus avellana HOM05D000942 ORTHO05D000918 9.1e-07 58.2 37 67.6
Duzib093G1174 Durio zibethinus HOM05D000942 ORTHO05D000918 9.1e-07 58.2 37 70.3
ECA236G2868 Erigeron canadensis HOM05D000942 ORTHO05D000918 9.1e-07 58.2 31 77.4
Migut.J01755 Erythranthe guttata HOM05D000942 ORTHO05D000918 9.1e-07 58.2 31 77.4
FAN02G3817 Fragaria x ananassa HOM05D000942 ORTHO05D000918 9.1e-07 58.2 37 73.0
FAN09G3986 Fragaria x ananassa HOM05D000942 ORTHO05D000918 9.1e-07 58.2 37 73.0
Glyma.03G136500 Glycine max HOM05D000942 ORTHO05D000918 9.1e-07 58.2 101 35.6
Gohir.D01G187300 Gossypium hirsutum HOM05D000942 ORTHO05D000918 9.1e-07 58.2 37 70.3
Gorai.002G230700 Gossypium raimondii HOM05D000942 ORTHO05D000918 9.1e-07 58.2 37 70.3
Lsat_1_v5_gn_8_81241 Lactuca sativa HOM05D000942 ORTHO05D000918 9.1e-07 58.2 31 77.4
Phvul.001G131700 Phaseolus vulgaris HOM05D000942 ORTHO05D000918 9.1e-07 58.2 101 35.6
SGA_v2.0_scaffold69G23120 Striga asiatica HOM05D000942 ORTHO05D000918 9.1e-07 58.2 31 77.4
Actinidia09326 Actinidia chinensis HOM05D000942 ORTHO05D000918 1.2e-06 57.8 31 77.4
CANSAT80G0062 Cannabis sativa HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 70.3
Cfa016811 Carpinus fangiana HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 64.9
COL.COLO4_28293 Corchorus olitorius HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 67.6
Duzib128G0162 Durio zibethinus HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 67.6
Thhalv10016183m.g Eutrema salsugineum HOM05D000942 ORTHO05D000918 1.2e-06 57.8 31 77.4
Glyma.10G099200 Glycine max HOM05D000942 ORTHO05D000918 1.2e-06 57.8 99 35.4
Gohir.A01G197100 Gossypium hirsutum HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 67.6
Gohir.D03G069500 Gossypium hirsutum HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 67.6
Gohir.D11G329100 Gossypium hirsutum HOM05D000942 ORTHO05D000918 1.2e-06 57.8 28 82.1
Gorai.003G091200 Gossypium raimondii HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 67.6
Lj1g0004813 Lotus japonicus HOM05D000942 ORTHO05D000918 1.2e-06 57.8 101 34.7
MBI17_g05577_MAGBIO Magnolia biondii HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 64.9
Manes.08G051200 Manihot esculenta HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 67.6
Nn7g36297 Nelumbo nucifera HOM05D000942 ORTHO05D000918 1.2e-06 57.8 99 35.4
QL07p000651 Quercus lobata HOM05D000942 ORTHO05D000918 1.2e-06 57.8 37 67.6
AL4G40050 Arabidopsis lyrata HOM05D000942 ORTHO05D000918 1.6e-06 57.4 41 65.9
AL5G38940 Arabidopsis lyrata HOM05D000942 ORTHO05D000918 1.6e-06 57.4 31 77.4
arahy.Tifrunner.gnm1.ann1.VBU6U3 Arachis hypogaea HOM05D000942 ORTHO05D000918 1.6e-06 57.4 99 35.4
MSTRG.26124 Avicennia marina HOM05D000942 ORTHO05D000918 1.6e-06 57.4 28 82.1
BcaNung02833 Brassica carinata HOM05D000942 ORTHO05D000918 1.6e-06 57.4 41 65.9
A09p50300 Brassica napus HOM05D000942 ORTHO05D000918 1.6e-06 57.4 31 74.2
C08p32830 Brassica napus HOM05D000942 ORTHO05D000918 1.6e-06 57.4 31 74.2
BolC8t50894H Brassica oleracea HOM05D000942 ORTHO05D000918 1.6e-06 57.4 31 74.2
BraA09t40481Z Brassica rapa HOM05D000942 ORTHO05D000918 1.6e-06 57.4 31 74.2
Potri.016G056200 Populus trichocarpa HOM05D000942 ORTHO05D000918 1.6e-06 57.4 37 67.6
vmacro07847 Vaccinium macrocarpon HOM05D000942 ORTHO05D000918 1.6e-06 57.4 31 74.2
MSTRG.19859 Avicennia marina HOM05D000942 ORTHO05D000918 2.0e-06 57.0 28 85.7
A03p23400 Brassica napus HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 77.4
C03p27920 Brassica napus HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 77.4
BolC3t15164H Brassica oleracea HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 77.4
BraA03t11557Z Brassica rapa HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 77.4
CARHR167610 Cardamine hirsuta HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 74.2
CiPaw.10G033500 Carya illinoinensis HOM05D000942 ORTHO05D000918 2.0e-06 57.0 37 64.9
Eucgr.A02344 Eucalyptus grandis HOM05D000942 ORTHO05D000918 2.0e-06 57.0 28 82.1
Nn2g15215 Nelumbo nucifera HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 74.2
PGR004G2703 Punica granatum HOM05D000942 ORTHO05D000918 2.0e-06 57.0 37 64.9
Sabra16G0058700 Salix brachista HOM05D000942 ORTHO05D000918 2.0e-06 57.0 37 64.9
Sed0011613 Sechium edule HOM05D000942 ORTHO05D000918 2.0e-06 57.0 37 70.3
TPR.G3740 Trifolium pratense HOM05D000942 ORTHO05D000918 2.0e-06 57.0 37 67.6
TWI53G0652 Tripterygium wilfordii HOM05D000942 ORTHO05D000918 2.0e-06 57.0 37 70.3
TAR369G0581 Trochodendron aralioides HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 74.2
TAR636G1932 Trochodendron aralioides HOM05D000942 ORTHO05D000918 2.0e-06 57.0 31 74.2
VMungo0720G1405 Vigna mungo HOM05D000942 ORTHO05D000918 2.0e-06 57.0 37 67.6
Aa31LG10G12250 Aethionema arabicum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 28 82.1
Aa31LG1G23750 Aethionema arabicum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 77.4
CAN.G676.34 Capsicum annuum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 77.4
DCAR_020493 Daucus carota HOM05D000942 ORTHO05D000918 2.7e-06 56.6 37 67.6
Thhalv10005772m.g Eutrema salsugineum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 28 82.1
Glyma.02G184600 Glycine max HOM05D000942 ORTHO05D000918 2.7e-06 56.6 99 34.3
Lju124C42G5 Lonicera japonica HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 74.2
Nitab4.5_0000586g0070 Nicotiana tabacum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 77.4
Nitab4.5_0003307g0070 Nicotiana tabacum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 74.2
Nitab4.5_0007003g0010 Nicotiana tabacum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 77.4
Psat6g118960 Pisum sativum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 99 32.3
Sp4g24010 Schrenkiella parvula HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 74.2
PGSC0003DMG400023689 Solanum tuberosum HOM05D000942 ORTHO05D000918 2.7e-06 56.6 31 77.4
TWI74G0895 Tripterygium wilfordii HOM05D000942 ORTHO05D000918 2.7e-06 56.6 37 67.6
arahy.Tifrunner.gnm1.ann1.QS4CJG Arachis hypogaea HOM05D000942 ORTHO05D000918 3.5e-06 56.2 28 78.6
CDE04G3185 Ceratophyllum demersum HOM05D000942 ORTHO05D000918 3.5e-06 56.2 33 69.7
Gohir.A11G312600 Gossypium hirsutum HOM05D000942 ORTHO05D000918 3.5e-06 56.2 28 82.1
Gorai.007G360500 Gossypium raimondii HOM05D000942 ORTHO05D000918 3.5e-06 56.2 28 82.1
Lj5g0005178 Lotus japonicus HOM05D000942 ORTHO05D000918 3.5e-06 56.2 99 34.3
Medtr7g091460 Medicago truncatula HOM05D000942 ORTHO05D000918 3.5e-06 56.2 28 82.1
Nitab4.5_0000364g0090 Nicotiana tabacum HOM05D000942 ORTHO05D000918 3.5e-06 56.2 31 74.2
Oeu008163.1 Olea europaea HOM05D000942 ORTHO05D000918 3.5e-06 56.2 37 73.0
PSO339G4942 Papaver somniferum HOM05D000942 ORTHO05D000918 3.5e-06 56.2 37 64.9
PSO384G3818 Papaver somniferum HOM05D000942 ORTHO05D000918 3.5e-06 56.2 37 64.9
Psat3g072880 Pisum sativum HOM05D000942 ORTHO05D000918 3.5e-06 56.2 28 82.1
Solyc04g015830.3 Solanum lycopersicum HOM05D000942 ORTHO05D000918 3.5e-06 56.2 31 74.2
HPP92_006732 Vanilla planifolia HOM05D000942 ORTHO05D000918 3.5e-06 56.2 33 63.6
Zm00001eb394440 Zea mays HOM05D000942 ORTHO05D000918 3.5e-06 56.2 33 66.7
AT2G41740 Arabidopsis thaliana HOM05D000942 ORTHO05D000918 4.5e-06 55.8 41 61.0
MSTRG.6427 Avicennia marina HOM05D000942 ORTHO05D000918 4.5e-06 55.8 31 74.2
CSS0023612 Camellia sinensis var. sinensis HOM05D000942 ORTHO05D000918 4.5e-06 55.8 31 71.0
CDE03G0142 Ceratophyllum demersum HOM05D000942 ORTHO05D000918 4.5e-06 55.8 38 60.5
Gorai.009G092400 Gossypium raimondii HOM05D000942 ORTHO05D000918 4.5e-06 55.8 70 37.1
Oeu023111.3 Olea europaea HOM05D000942 ORTHO05D000918 4.5e-06 55.8 31 77.4
THA.LOC104824441 Tarenaya hassleriana HOM05D000942 ORTHO05D000918 4.5e-06 55.8 28 82.1
unitig_22.g6040 Utricularia gibba HOM05D000942 ORTHO05D000918 4.5e-06 55.8 31 71.0
Zm00001eb017330 Zea mays HOM05D000942 ORTHO05D000918 4.5e-06 55.8 33 66.7
A05p02500 Brassica napus HOM05D000942 ORTHO05D000918 5.9e-06 55.5 31 71.0
C04p02960 Brassica napus HOM05D000942 ORTHO05D000918 5.9e-06 55.5 31 71.0
BolC4t21936H Brassica oleracea HOM05D000942 ORTHO05D000918 5.9e-06 55.5 31 71.0
BraA05t19243Z Brassica rapa HOM05D000942 ORTHO05D000918 5.9e-06 55.5 31 71.0
Migut.K00091 Erythranthe guttata HOM05D000942 ORTHO05D000918 5.9e-06 55.5 31 74.2
Glyma.19G138700 Glycine max HOM05D000942 ORTHO05D000918 5.9e-06 55.5 28 82.1
Ca_07731_v3 Cicer arietinum L. HOM05D000942 ORTHO05D000918 7.7e-06 55.1 32 65.6
Gohir.A02G107500 Gossypium hirsutum HOM05D000942 ORTHO05D000918 7.7e-06 55.1 37 64.9
Lsat_1_v5_gn_4_21621 Lactuca sativa HOM05D000942 ORTHO05D011576 7.7e-06 55.1 51 47.1
PGR142G1341 Punica granatum HOM05D000942 ORTHO05D000918 7.7e-06 55.1 41 61.0
SEGI_33935 Sequoiadendron giganteum HOM05D000942 ORTHO05D000918 7.7e-06 55.1 33 63.6
Sopen10g030710 Solanum pennellii HOM05D000942 ORTHO05D000918 7.7e-06 55.1 31 74.2


User provided reference genes

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