Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 2.6e-83 312.0 157 100.0
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 2.9e-34 149.1 155 56.1
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 8.0e-24 114.4 170 44.1
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.5e-22 110.2 124 50.0
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 6.3e-21 104.8 186 40.9
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.8e-20 103.2 141 46.8
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 1.8e-20 103.2 199 40.7
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.4e-20 102.8 197 41.1
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 2.4e-20 102.8 189 42.3
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 4.1e-20 102.1 157 41.4
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 9.1e-20 100.9 166 40.4
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 2.3e-18 96.3 182 40.1
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 5.0e-18 95.1 170 44.7
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 5.0e-18 95.1 182 41.8
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 5.0e-18 95.1 123 48.0
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 8.6e-18 94.4 170 41.8
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 8.6e-18 94.4 150 44.0
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.5e-17 93.6 160 41.9
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.9e-17 93.2 166 40.4
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 5.5e-17 91.7 163 40.5
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 5.5e-17 91.7 167 43.1
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 7.2e-17 91.3 181 39.8
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.6e-16 90.1 182 40.7
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.1e-16 89.7 148 41.2
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.8e-16 89.4 175 37.7
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.8e-16 89.4 209 33.5
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 3.6e-16 89.0 168 39.3
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.6e-16 89.0 149 43.6
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 6.1e-16 88.2 142 45.8
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 6.1e-16 88.2 143 41.3
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.0e-15 87.4 150 43.3
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.3e-15 86.3 190 35.3
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 3.0e-15 85.9 184 37.0
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 4.0e-15 85.5 126 44.4
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.0e-15 85.5 164 38.4
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 4.0e-15 85.5 198 34.8
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 6.8e-15 84.7 169 41.4
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 7.5e-14 81.3 168 39.3
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 7.5e-14 81.3 196 35.2
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 9.8e-14 80.9 159 43.4
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.3e-13 80.5 115 42.6
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.7e-13 80.1 126 42.1
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 1.7e-13 80.1 181 37.0
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.7e-13 80.1 166 39.8
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.2e-13 79.7 148 41.2
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.2e-13 79.7 184 34.8
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.2e-13 79.7 184 34.8
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 2.8e-13 79.3 160 40.6
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 3.7e-13 79.0 186 36.0
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 3.7e-13 79.0 186 36.0
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 3.7e-13 79.0 185 35.7
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 4.9e-13 78.6 155 37.4
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 6.3e-13 78.2 112 42.9
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.3e-13 78.2 164 40.9
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-12 77.4 173 35.3
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 1.1e-12 77.4 197 36.0
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 1.4e-12 77.0 133 41.4
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.4e-12 77.0 102 47.1
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.4e-12 77.0 195 35.4
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 4.1e-12 75.5 226 32.7
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 4.1e-12 75.5 185 35.1
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 5.4e-12 75.1 132 40.2
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 5.4e-12 75.1 203 32.5
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 1.2e-11 73.9 99 46.5
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 2.0e-11 73.2 174 33.3
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.7e-11 72.8 95 48.4
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 3.5e-11 72.4 215 31.6
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 3.5e-11 72.4 163 35.6
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 3.5e-11 72.4 237 29.1
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 4.5e-11 72.0 88 50.0
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 4.5e-11 72.0 200 32.5
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 5.9e-11 71.6 193 32.6
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 1.7e-10 70.1 151 35.1
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 2.3e-10 69.7 83 48.2
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 3.8e-10 68.9 160 36.2
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 5.0e-10 68.6 149 36.2
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 5.0e-10 68.6 102 45.1
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 1.5e-09 67.0 122 36.1
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 1.5e-09 67.0 64 56.2
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.9e-09 66.6 178 36.0
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 1.9e-09 66.6 161 35.4
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 2.5e-09 66.2 162 35.2
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 4.3e-09 65.5 191 31.9
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 4.3e-09 65.5 109 38.5
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 5.6e-09 65.1 146 38.4
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 5.6e-09 65.1 165 36.4
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 7.3e-09 64.7 99 44.4
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 7.3e-09 64.7 117 36.8
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 7.3e-09 64.7 175 33.1
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 1.6e-08 63.5 157 33.1
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 1.6e-08 63.5 157 33.1
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 1.6e-08 63.5 149 32.2
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 1.6e-08 63.5 148 37.8
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 2.1e-08 63.2 163 35.0
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 2.1e-08 63.2 143 36.4
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 2.8e-08 62.8 122 35.2
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 3.6e-08 62.4 122 35.2
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 3.6e-08 62.4 193 32.1
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 4.7e-08 62.0 83 38.6
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 4.7e-08 62.0 56 50.0
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 4.7e-08 62.0 83 38.6
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 4.7e-08 62.0 56 50.0
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 6.1e-08 61.6 193 30.6
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 8.0e-08 61.2 83 39.8
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 8.0e-08 61.2 56 50.0
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.0e-07 60.8 183 31.7
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 1.4e-07 60.5 150 33.3
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 1.4e-07 60.5 150 33.3
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.4e-07 60.5 178 34.8
Ah.02g125350 Amaranthus hybridus HOM05D022777 ORTHO05D004599 1.8e-07 60.1 132 35.6
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 1.8e-07 60.1 127 33.9
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 2.3e-07 59.7 103 37.9
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 2.3e-07 59.7 181 32.6
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.0e-07 59.3 70 55.7
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 4.0e-07 58.9 134 32.1
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 4.0e-07 58.9 160 35.0
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 4.0e-07 58.9 87 43.7
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 4.0e-07 58.9 86 45.3
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 4.0e-07 58.9 138 38.4
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 5.2e-07 58.5 196 32.1
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 6.8e-07 58.2 181 30.4
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 6.8e-07 58.2 85 44.7
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 8.9e-07 57.8 69 44.9
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 8.9e-07 57.8 86 44.2
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 8.9e-07 57.8 64 50.0
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.2e-06 57.4 49 65.3
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.2e-06 57.4 200 30.5
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 1.2e-06 57.4 52 57.7
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 1.5e-06 57.0 141 36.9
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 2.0e-06 56.6 51 47.1
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 2.0e-06 56.6 51 47.1
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 2.0e-06 56.6 51 47.1
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 2.6e-06 56.2 51 47.1
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 2.6e-06 56.2 51 47.1
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 2.6e-06 56.2 51 47.1
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 4.4e-06 55.5 57 49.1
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 4.4e-06 55.5 55 58.2
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 4.4e-06 55.5 85 41.2
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 5.8e-06 55.1 51 58.8
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 5.8e-06 55.1 140 33.6
AUR62004024 Chenopodium quinoa HOM05D022777 ORTHO05D004599 7.5e-06 54.7 130 36.9
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 7.5e-06 54.7 185 29.2


User provided reference genes

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