Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 2460.6 1280 100.0
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1587.8 1286 66.5
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1557.0 1284 65.3
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1322.0 1310 55.3
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1295.0 1310 54.5
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1276.5 1303 54.5
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1256.1 1322 53.3
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1244.6 1302 53.1
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1242.6 1302 53.3
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1233.4 1302 53.0
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1229.5 1329 52.4
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1223.4 1307 52.3
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1189.5 1300 51.5
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1177.9 1323 50.3
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1177.2 1296 51.6
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1174.5 1323 50.1
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1174.5 1282 51.8
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1155.6 1307 50.3
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1323 50.3
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1153.3 1302 50.3
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1143.6 1310 49.3
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1143.3 1312 49.1
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1135.9 1317 49.6
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1132.1 1304 49.2
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1131.3 1311 49.3
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1129.8 1317 49.1
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1126.7 1290 49.8
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1119.8 1320 48.9
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1119.8 1309 49.7
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1119.8 1301 48.7
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1119.0 1311 48.7
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1118.2 1301 48.7
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1116.3 1302 49.5
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1115.5 1290 50.1
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1115.1 1301 48.6
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1114.8 1136 55.2
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1110.9 1292 49.6
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1105.9 1297 48.4
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1098.6 1306 49.8
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1094.7 1311 46.8
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1084.7 1322 47.7
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1080.9 1301 48.1
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1080.1 1321 47.4
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1079.7 1283 47.6
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1078.2 1294 49.0
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1075.8 1316 46.9
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 4.4e-311 1071.6 1323 46.3
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 1.1e-309 1067.0 1312 47.2
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 1.9e-309 1066.2 1226 49.8
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 4.3e-309 1065.1 1292 48.1
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 8.1e-308 1060.8 1249 46.8
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 1.4e-307 1060.1 1329 46.6
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 5.2e-307 1058.1 1310 46.4
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 9.0e-307 1057.4 1304 47.4
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 2.6e-306 1055.8 1322 46.0
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 7.6e-306 1054.3 1318 46.8
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 1.7e-305 1053.1 1307 48.0
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.4e-304 1050.0 1312 47.0
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 1.9e-304 1049.7 1301 47.1
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 4.6e-303 1045.0 1293 47.2
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 1.7e-302 1043.1 1312 45.0
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 2.3e-302 1042.7 1311 46.8
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 3.3e-301 1038.9 1300 45.5
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 2.1e-300 1036.2 1137 50.8
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 2.1e-300 1036.2 1311 45.7
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 4.8e-300 1035.0 1309 45.8
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 4.2e-296 1021.9 1290 45.8
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.2e-295 1020.4 1289 46.0
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 2.7e-295 1019.2 1292 46.6
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 2.7e-295 1019.2 1301 46.0
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 3.9e-294 1015.4 1299 45.2
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 6.7e-294 1014.6 1295 46.3
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 1.9e-293 1013.1 1320 44.8
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 3.7e-292 1008.8 1289 45.3
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 8.1e-292 1007.7 1288 45.4
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.8e-291 1006.5 1066 53.2
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 2.4e-291 1006.1 1301 45.4
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.4e-291 1006.1 1279 47.9
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 4.5e-290 1001.9 888 61.8
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 4.2e-288 995.3 1228 48.4
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 8.7e-286 987.6 1294 45.1
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 7.4e-285 984.6 1320 44.9
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 4.0e-283 978.8 1296 44.4
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 1.2e-282 977.2 1225 47.9
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 2.2e-281 973.0 1297 44.3
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 1.5e-274 950.3 1300 44.2
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 4.2e-272 942.2 987 54.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 7.2e-272 941.4 939 54.0
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 2.8e-268 929.5 1297 43.5
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.2e-257 893.3 906 54.4
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 9.1e-251 871.3 1291 42.0
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.6e-242 844.0 1253 41.3
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 3.6e-239 832.8 1089 44.3
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 3.5e-226 789.6 916 50.0
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.8e-221 772.3 1032 44.3
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 3.0e-209 733.4 996 43.9
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 8.9e-206 721.8 1264 37.8
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 8.4e-196 688.7 1039 41.5
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 2.3e-193 680.6 1108 38.4
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.1e-169 599.7 907 40.4
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.6e-165 587.4 850 40.7
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 9.0e-158 562.4 841 39.8
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 9.0e-158 562.4 616 51.3
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 2.9e-156 557.4 1202 32.5
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.6e-149 534.3 799 39.4
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.5e-131 474.6 479 55.7
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 4.7e-130 470.3 359 71.3
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.1e-126 457.2 681 39.5
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.1e-110 404.1 597 41.5
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 5.4e-94 350.5 344 59.6
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 7.1e-94 350.1 341 59.2
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.3e-92 345.1 340 59.1
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 3.6e-82 311.2 282 57.8
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 3.3e-75 288.1 502 33.7
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.4e-65 255.4 467 35.5
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 4.0e-65 254.6 488 33.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.1e-60 237.7 650 27.5
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-55 222.2 382 33.2
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.5e-51 208.8 292 40.1
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.5e-48 199.5 386 33.7
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 2.5e-43 182.2 380 33.4
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 2.2e-42 179.1 390 29.7
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.8e-42 177.9 300 37.3
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 5.0e-31 141.4 172 39.5
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.2e-22 111.7 313 28.8
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.6e-19 102.4 203 35.0
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 4.5e-16 91.7 374 26.5
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.8e-15 88.6 126 37.3
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 2.3e-12 79.3 114 37.7
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 8.8e-12 77.4 114 35.1
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 7.5e-11 74.3 114 34.2
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.3e-10 73.6 61 60.7
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.7e-10 73.2 118 33.9


User provided reference genes

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