Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07417 Striga asiatica HOM05D002441 ORTHO05D000174 8.5e-69 263.5 126 100.0
SGA_v2.0_scaffold28G11887 Striga asiatica HOM05D002441 ORTHO05D000174 9.2e-55 216.9 142 74.6
SGA_v2.0_scaffold31G12890 Striga asiatica HOM05D002441 ORTHO05D002376 3.4e-25 118.6 144 48.6
Nitab4.5_0002702g0050 Nicotiana tabacum HOM05D002441 ORTHO05D002376 8.1e-11 70.9 125 32.0
Ah.11g041650 Amaranthus hybridus HOM05D000353 ORTHO05D000174 1.4e-10 70.1 139 29.5
ECA240G2426 Erigeron canadensis HOM05D000353 ORTHO05D000174 9.0e-10 67.4 134 28.4
SGA_v2.0_scaffold241G44194 Striga asiatica HOM05D011787 ORTHO05D008317 9.0e-10 67.4 120 33.3
ECA232G2412 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.6e-09 65.9 134 31.3
ECA234G0608 Erigeron canadensis HOM05D000615 ORTHO05D000447 3.4e-09 65.5 135 28.1
Medtr1g011490 Medicago truncatula HOM05D008036 ORTHO05D000174 2.2e-08 62.8 68 35.3
SGA_v2.0_scaffold101G29754 Striga asiatica HOM05D011754 ORTHO05D014689 2.2e-08 62.8 140 30.7
Medtr2g019040 Medicago truncatula HOM05D008036 ORTHO05D000174 2.9e-08 62.4 106 27.4
SGA_v2.0_scaffold319G48528 Striga asiatica HOM05D011754 ORTHO05D014689 2.9e-08 62.4 91 37.4
SGA_v2.0_scaffold53G19356 Striga asiatica HOM05D011787 ORTHO05D008317 2.9e-08 62.4 128 31.2
Lj1g0016702 Lotus japonicus HOM05D007499 ORTHO05D000174 4.9e-08 61.6 134 30.6
HanXRQChr12g0359401 Helianthus annuus HOM05D003964 ORTHO05D011997 6.4e-08 61.2 142 26.8
Medtr7g451880 Medicago truncatula HOM05D008036 ORTHO05D000174 6.4e-08 61.2 99 28.3
Medtr4g036240 Medicago truncatula HOM05D000353 ORTHO05D000174 8.4e-08 60.8 134 32.8
Nitab4.5_0007040g0020 Nicotiana tabacum HOM05D002441 ORTHO05D002376 1.1e-07 60.5 137 29.2
Medtr3g056270 Medicago truncatula HOM05D000353 ORTHO05D000174 1.4e-07 60.1 134 32.8
Medtr4g058660 Medicago truncatula HOM05D008036 ORTHO05D000174 1.4e-07 60.1 68 35.3
Lj4g0014650 Lotus japonicus HOM05D020041 ORTHO05D030020 1.9e-07 59.7 80 37.5
Medtr1g082860 Medicago truncatula HOM05D008036 ORTHO05D000174 2.4e-07 59.3 60 38.3
Medtr7g074180 Medicago truncatula HOM05D008036 ORTHO05D000174 2.4e-07 59.3 68 33.8
arahy.Tifrunner.gnm1.ann1.9DML6S Arachis hypogaea HOM05D002441 ORTHO05D002376 3.2e-07 58.9 142 26.8
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 3.2e-07 58.9 145 29.0
SGA_v2.0_scaffold237G43840 Striga asiatica HOM05D010852 ORTHO05D002376 4.2e-07 58.5 141 25.5
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 5.5e-07 58.2 140 25.7
Medtr0105s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 5.5e-07 58.2 62 35.5
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 5.5e-07 58.2 141 27.0
arahy.Tifrunner.gnm1.ann1.AKH4BK Arachis hypogaea HOM05D000353 ORTHO05D000174 7.1e-07 57.8 133 27.1
arahy.Tifrunner.gnm1.ann1.CPRZ31 Arachis hypogaea HOM05D000353 ORTHO05D000174 7.1e-07 57.8 133 27.1
arahy.Tifrunner.gnm1.ann1.J9NJUF Arachis hypogaea HOM05D000353 ORTHO05D000174 7.1e-07 57.8 133 27.1
arahy.Tifrunner.gnm1.ann1.LSFF47 Arachis hypogaea HOM05D000353 ORTHO05D000174 7.1e-07 57.8 133 27.1
Medtr2g010270 Medicago truncatula HOM05D008036 ORTHO05D000174 7.1e-07 57.8 58 37.9
arahy.Tifrunner.gnm1.ann1.IYP2GG Arachis hypogaea HOM05D000353 ORTHO05D000174 9.3e-07 57.4 133 27.1
arahy.Tifrunner.gnm1.ann1.Y6YSHD Arachis hypogaea HOM05D000353 ORTHO05D000174 1.2e-06 57.0 133 27.8
ECA232G4682 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-06 57.0 136 27.2
SGA_v2.0_scaffold9G04715 Striga asiatica HOM05D008036 ORTHO05D000174 1.2e-06 57.0 52 48.1
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 1.6e-06 56.6 137 26.3
arahy.Tifrunner.gnm1.ann1.HP5C5B Arachis hypogaea HOM05D012160 ORTHO05D009491 2.1e-06 56.2 122 27.9
Medtr3g015660 Medicago truncatula HOM05D008036 ORTHO05D000174 2.1e-06 56.2 62 33.9
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 2.7e-06 55.8 133 28.6
Medtr1g023370 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr2g005490 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr2g007410 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr2g010570 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr3g031190 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr5g030110 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr5g056290 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr5g081190 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr5g091480 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr6g087820 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr7g024060 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Medtr8g446640 Medicago truncatula HOM05D008036 ORTHO05D000174 3.5e-06 55.5 68 32.4
Glyma.04G181700 Glycine max HOM05D002090 ORTHO05D001923 4.6e-06 55.1 141 27.0
HanXRQChr05g0145471 Helianthus annuus HOM05D003964 ORTHO05D000174 4.6e-06 55.1 137 27.0
HanXRQChr14g0428201 Helianthus annuus HOM05D003964 ORTHO05D000174 4.6e-06 55.1 136 26.5
HanXRQChr06g0179651 Helianthus annuus HOM05D003964 ORTHO05D000174 7.9e-06 54.3 139 22.3
HanXRQChr08g0230241 Helianthus annuus HOM05D003964 ORTHO05D000174 7.9e-06 54.3 139 22.3
HanXRQChr17g0566701 Helianthus annuus HOM05D003964 ORTHO05D000174 7.9e-06 54.3 139 22.3
Medtr8g027910 Medicago truncatula HOM05D002090 ORTHO05D001923 7.9e-06 54.3 67 40.3


User provided reference genes

Program Settings