Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 1.6e-145 519.6 297 100.0
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 6.9e-61 238.4 288 46.9
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.5e-60 237.3 301 46.8
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 7.7e-60 235.0 283 47.0
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 1.7e-59 233.8 282 49.3
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 3.8e-59 232.6 282 51.1
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 8.5e-59 231.5 273 46.9
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 1.1e-58 231.1 279 48.0
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 1.4e-58 230.7 280 47.1
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 1.9e-58 230.3 276 46.4
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 2.5e-58 229.9 285 48.8
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 2.5e-58 229.9 275 48.7
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 3.2e-58 229.6 282 48.9
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 4.2e-58 229.2 279 47.0
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 4.2e-58 229.2 288 49.0
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 5.5e-58 228.8 282 49.3
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 7.2e-58 228.4 293 45.4
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 7.2e-58 228.4 273 48.7
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 1.2e-57 227.6 284 48.6
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 1.2e-57 227.6 300 45.7
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.2e-57 227.6 273 48.7
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.6e-57 227.3 273 48.4
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 2.1e-57 226.9 292 45.5
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 3.6e-57 226.1 276 48.2
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 3.6e-57 226.1 275 48.0
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 3.6e-57 226.1 275 48.0
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 6.1e-57 225.3 289 46.0
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 7.9e-57 224.9 282 44.3
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 7.9e-57 224.9 282 45.7
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 7.9e-57 224.9 282 46.1
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 1.8e-56 223.8 284 45.1
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 1.8e-56 223.8 285 44.6
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 1.8e-56 223.8 285 46.7
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 3.0e-56 223.0 274 47.1
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 3.0e-56 223.0 290 45.5
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 3.0e-56 223.0 287 46.0
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 3.9e-56 222.6 281 44.1
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 5.1e-56 222.2 283 46.6
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 5.1e-56 222.2 280 48.2
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 5.1e-56 222.2 286 44.8
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 6.7e-56 221.9 278 44.6
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 6.7e-56 221.9 273 46.2
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 6.7e-56 221.9 298 44.0
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 1.5e-55 220.7 283 44.5
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 1.5e-55 220.7 282 43.6
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 2.0e-55 220.3 286 44.4
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 2.0e-55 220.3 277 44.4
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 2.0e-55 220.3 289 45.3
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 3.3e-55 219.5 282 44.0
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 3.3e-55 219.5 279 44.1
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 4.4e-55 219.2 283 50.5
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 5.7e-55 218.8 273 45.8
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 5.7e-55 218.8 282 46.1
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 5.7e-55 218.8 280 45.4
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 7.4e-55 218.4 297 45.1
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 7.4e-55 218.4 273 46.5
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 9.7e-55 218.0 285 45.3
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 9.7e-55 218.0 283 46.6
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 1.7e-54 217.2 283 48.8
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 2.2e-54 216.9 283 44.9
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 2.2e-54 216.9 310 43.9
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 2.8e-54 216.5 283 44.9
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 2.8e-54 216.5 286 44.8
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 3.7e-54 216.1 284 43.3
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 4.8e-54 215.7 289 43.3
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 4.8e-54 215.7 273 46.5
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 6.3e-54 215.3 284 45.1
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 6.3e-54 215.3 284 45.1
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 8.2e-54 214.9 286 44.4
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 8.2e-54 214.9 284 45.1
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 1.1e-53 214.5 292 43.5
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 1.1e-53 214.5 286 44.1
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 1.4e-53 214.2 284 44.4
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 1.4e-53 214.2 284 44.4
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 1.4e-53 214.2 284 44.4
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 1.4e-53 214.2 282 42.9
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 1.8e-53 213.8 285 43.5
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 2.4e-53 213.4 286 44.1
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 3.1e-53 213.0 286 43.7
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 3.1e-53 213.0 286 44.1
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 4.1e-53 212.6 284 44.0
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 5.3e-53 212.2 286 43.7
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 7.0e-53 211.8 274 43.4
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 7.0e-53 211.8 275 47.6
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 9.1e-53 211.5 300 43.7
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 9.1e-53 211.5 277 50.5
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 1.2e-52 211.1 282 44.3
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.2e-52 211.1 274 46.0
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.2e-52 211.1 273 47.6
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.5e-52 210.7 300 41.7
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 1.5e-52 210.7 289 45.0
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.5e-52 210.7 286 42.3
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.0e-52 210.3 300 41.3
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 2.0e-52 210.3 284 43.7
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 2.6e-52 209.9 287 49.5
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.0e-51 208.0 300 41.3
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 1.0e-51 208.0 274 45.3
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 1.7e-51 207.2 305 43.3
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 1.7e-51 207.2 299 43.1
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 1.7e-51 207.2 280 42.9
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 2.9e-51 206.5 278 43.2
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 6.5e-51 205.3 180 60.0
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.1e-50 204.5 300 40.3
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 1.4e-50 204.1 278 45.0
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 1.9e-50 203.8 288 41.7
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 3.2e-50 203.0 285 42.5
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 4.2e-50 202.6 301 42.9
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 5.5e-50 202.2 280 41.8
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 5.5e-50 202.2 296 43.6
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 2.7e-49 199.9 279 44.1
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 3.6e-49 199.5 276 43.1
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 4.7e-49 199.1 284 43.7
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.4e-48 197.6 273 42.5
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 2.3e-48 196.8 183 58.5
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 1.1e-47 194.5 183 56.8
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 1.5e-47 194.1 274 41.2
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 5.7e-47 192.2 273 41.8
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 7.4e-47 191.8 184 57.1
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 9.7e-47 191.4 260 41.9
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 1.3e-46 191.0 180 57.8
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 4.8e-46 189.1 281 40.6
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 1.8e-45 187.2 281 42.0
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 3.1e-45 186.4 201 51.7
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 4.1e-45 186.0 280 39.3
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.6e-44 184.1 161 61.5
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 3.5e-44 183.0 280 39.6
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.1e-42 177.9 170 55.3
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 2.5e-42 176.8 254 41.3
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 4.7e-41 172.6 195 49.2
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 2.3e-40 170.2 286 38.8
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 3.0e-40 169.9 289 40.5
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 2.6e-39 166.8 272 38.6
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 9.7e-39 164.9 274 37.6
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 1.3e-38 164.5 283 40.6
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 1.1e-37 161.4 168 56.5
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 9.1e-29 131.7 180 44.4
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 8.0e-17 92.0 146 37.7
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 1.4e-16 91.3 79 60.8
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 1.2e-15 88.2 137 35.0
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.5e-15 87.8 282 24.1
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 8.6e-11 72.0 283 21.9
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 5.8e-07 59.3 179 24.6
Duzib192G0673 Durio zibethinus HOM05D000904 ORTHO05D005281 2.2e-06 57.4 175 26.9
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 6.4e-06 55.8 284 22.2
PRCOL_00006078 Prasinoderma coloniale HOM05D000825 ORTHO05D003462 6.4e-06 55.8 181 28.7


User provided reference genes

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