Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 6333.4 3190 100.0
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 3953.3 3260 64.5
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 3853.5 3264 63.1
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 3653.2 3259 60.6
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2744.9 3283 47.5
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2583.1 3039 47.8
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2578.5 3283 44.9
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2521.1 3351 44.3
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2446.8 3544 42.2
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2438.3 3301 43.7
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2416.0 3302 43.5
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2385.5 3268 43.7
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2381.7 3305 42.9
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2358.2 3261 42.7
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2345.5 3304 42.3
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2325.4 3346 41.5
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2324.3 3276 42.2
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2310.4 3237 42.7
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2292.7 3294 42.1
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2276.5 3342 41.4
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2269.6 3285 41.4
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2267.7 3234 42.2
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2255.3 3344 41.0
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2250.7 3265 41.2
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2244.5 3299 41.0
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2240.3 3300 41.2
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2240.3 3214 42.7
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2232.6 3285 41.1
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2224.5 3339 41.0
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2216.4 3304 40.8
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2189.1 3381 40.0
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2187.9 3272 40.6
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2179.4 3312 40.3
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2151.3 3936 36.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2150.9 3274 40.8
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2137.1 3268 40.1
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2117.8 3309 40.0
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2112.0 3308 40.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2111.6 3291 39.9
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2111.3 3290 39.8
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2107.4 3298 39.6
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2105.1 3396 39.2
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2080.1 2991 41.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2075.4 3292 39.3
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2069.3 2928 42.3
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2068.1 3318 39.6
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 2065.8 3219 40.8
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2046.2 3303 39.0
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2040.4 3268 39.2
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2036.5 2158 51.7
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2006.5 3351 38.2
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1981.5 3279 38.3
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1951.0 3218 38.3
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 1947.9 3288 38.3
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 1942.5 3279 37.5
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 1940.2 3278 37.0
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1921.4 1792 56.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 1909.4 3297 37.4
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1905.6 3285 37.1
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1905.6 3285 37.1
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1900.9 3284 37.1
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1896.7 3290 36.9
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1889.0 3104 37.9
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1879.8 3281 36.8
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1876.3 3333 36.1
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1869.4 3249 37.6
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1869.4 1853 53.8
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1857.0 3298 37.4
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1835.5 2910 39.1
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1827.8 3280 37.3
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1814.7 3360 36.8
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1800.4 2960 38.2
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1756.1 2316 44.4
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1744.2 2557 40.8
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1726.5 2414 42.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1619.8 3306 34.0
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1614.0 1646 53.3
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1585.1 1401 58.9
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1564.7 2983 35.2
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1527.7 1748 48.6
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1509.6 1429 56.2
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1432.5 1350 56.7
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1386.7 1505 49.7
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1349.0 1393 52.1
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1342.4 1821 43.5
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1270.0 1274 53.5
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1219.1 1395 48.6
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1211.4 1265 52.0
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1185.6 2633 32.9
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 0.0e+00 1178.7 1729 42.0
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1104.7 1962 36.5
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1099.3 1880 37.2
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1079.3 1172 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 9.1e-300 1035.4 2070 33.8
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 3.5e-291 1006.9 1977 34.2
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 2.5e-289 1000.7 1420 43.2
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.0e-283 981.1 2583 29.9
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 7.5e-270 936.0 1356 40.8
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 9.0e-223 779.6 596 66.8
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 6.9e-199 700.3 626 58.6
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 4.5e-198 697.6 1868 30.2
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.2e-176 625.5 1273 33.2
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.1e-175 623.2 1273 33.5
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 4.1e-175 621.3 1882 27.6
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.9e-173 615.1 2138 26.8
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 2.0e-169 602.4 1285 31.7
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.1e-148 533.5 465 60.2
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 8.6e-141 507.3 867 36.6
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 1.1e-140 506.9 1181 31.8
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 3.1e-130 472.2 888 34.6
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.9e-124 453.0 935 35.6
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 4.3e-124 451.8 974 33.2
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.1e-114 420.6 310 72.9
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 5.8e-113 414.8 1540 25.8
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.9e-111 409.8 918 32.5
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 1.7e-109 403.3 464 47.2
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 3.7e-91 342.4 975 27.3
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 9.0e-90 337.8 876 28.5
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 3.3e-84 319.3 880 27.5
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 2.7e-70 273.1 257 59.5
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.9e-69 269.2 574 32.9
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 2.1e-62 246.9 1211 24.9
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 6.3e-59 235.3 224 57.6
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.7e-57 229.9 371 38.5
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 5.4e-50 205.7 146 67.8
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 7.0e-50 205.3 153 66.0
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 9.1e-50 204.9 152 66.4
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 4.2e-47 196.1 383 33.4
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 5.9e-41 175.6 233 47.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.0e-40 174.9 663 24.7
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 5.6e-39 169.1 212 48.1
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.6e-38 166.4 104 80.8
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-33 151.4 527 27.5
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 5.0e-32 146.0 99 76.8
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 1.2e-30 141.4 158 45.6
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 3.1e-29 136.7 358 31.0
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 4.4e-28 132.9 121 59.5
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 7.0e-26 125.6 334 29.6
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 1.2e-25 124.8 828 21.0
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 2.3e-24 120.6 513 25.5
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 3.6e-22 113.2 166 34.9
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.4e-20 106.7 61 83.6
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.2e-17 98.2 174 40.2
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 6.0e-17 95.9 182 30.8
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 2.1e-14 87.4 187 28.9
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 4.7e-14 86.3 56 69.6
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 1.4e-13 84.7 205 27.8
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-13 84.7 419 21.0
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 8.9e-13 82.0 92 48.9
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 2.0e-12 80.9 207 25.6
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 2.6e-12 80.5 117 41.0
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 5.8e-12 79.3 774 20.4
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 9.9e-12 78.6 472 20.3
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.3e-11 78.2 68 57.4
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.1e-10 73.2 94 39.4
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 4.1e-10 73.2 666 21.2
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 5.4e-10 72.8 376 22.9
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 2.1e-09 70.9 502 20.7
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 2.7e-09 70.5 631 20.8
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 3.5e-09 70.1 51 70.6
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 6.0e-09 69.3 79 43.0
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 3.9e-08 66.6 477 19.9
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 1.1e-07 65.1 317 22.4
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 1.5e-07 64.7 458 21.6
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.5e-07 64.7 217 28.1
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.9e-07 64.3 475 21.1
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 3.3e-07 63.5 78 41.0
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 1.6e-06 61.2 38 68.4


User provided reference genes

Program Settings