Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold159G37686 Striga asiatica HOM05D002032 ORTHO05D400364 6.2e-79 297.4 146 100.0
SGA_v2.0_scaffold27G11718 Striga asiatica HOM05D002032 ORTHO05D402574 5.5e-19 98.2 89 62.9
SGA_v2.0_scaffold48G18026 Striga asiatica HOM05D002032 ORTHO05D002247 1.2e-18 97.1 55 85.5
SalBow7G0458 Salvia bowleyana HOM05D002032 ORTHO05D002247 1.8e-17 93.2 53 79.2
Solyc04g055110.3 Solanum lycopersicum HOM05D002032 ORTHO05D002247 3.0e-17 92.4 52 80.8
Sopen04g024970 Solanum pennellii HOM05D002032 ORTHO05D002247 3.0e-17 92.4 52 80.8
Nitab4.5_0000104g0140 Nicotiana tabacum HOM05D002032 ORTHO05D002247 3.9e-17 92.0 52 80.8
Peaxi162Scf00212g01218 Petunia axillaris HOM05D002032 ORTHO05D002247 3.9e-17 92.0 52 80.8
Cc07_g15330 Coffea canephora HOM05D002032 ORTHO05D002247 6.7e-17 91.3 52 78.8
Ah.05g174140 Amaranthus hybridus HOM05D002032 ORTHO05D002247 3.3e-16 89.0 52 78.8
Nitab4.5_0007318g0020 Nicotiana tabacum HOM05D002032 ORTHO05D002247 3.3e-16 89.0 52 78.8
Oeu057402.1 Olea europaea HOM05D002032 ORTHO05D002247 4.4e-16 88.6 53 77.4
CAN.G441.4 Capsicum annuum HOM05D002032 ORTHO05D002247 5.7e-16 88.2 52 76.9
TAR628G0855 Trochodendron aralioides HOM05D002032 ORTHO05D002247 5.7e-16 88.2 52 78.8
Atru.chr4.78 Acer truncatum HOM05D002032 ORTHO05D002247 7.4e-16 87.8 52 78.8
MD15G1325200 Malus domestica HOM05D002032 ORTHO05D002247 7.4e-16 87.8 52 78.8
Actinidia12299 Actinidia chinensis HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
MSTRG.24943 Avicennia marina HOM05D002032 ORTHO05D002247 9.7e-16 87.4 50 82.0
CSS0013103 Camellia sinensis var. sinensis HOM05D002032 ORTHO05D002247 9.7e-16 87.4 53 77.4
FvH4_5g23640 Fragaria vesca HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
FAN04G3128 Fragaria x ananassa HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
FAN08G2469 Fragaria x ananassa HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
FAN13G1398 Fragaria x ananassa HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
FAN18G4585 Fragaria x ananassa HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
MBI02_g08732_MAGBIO Magnolia biondii HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 76.9
MD01G1028300 Malus domestica HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
Prupe.6G184800 Prunus persica HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
QL06p049680 Quercus lobata HOM05D002032 ORTHO05D002247 9.7e-16 87.4 52 78.8
FAN18G4456 Fragaria x ananassa HOM05D002032 ORTHO05D002247 1.7e-15 86.7 52 78.8
Hma1.2p1_0697F.1_g205080 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 1.7e-15 86.7 52 76.9
Hma1.2p1_1975F.1_g309700 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 1.7e-15 86.7 52 76.9
TAR376G0387 Trochodendron aralioides HOM05D002032 ORTHO05D002247 1.7e-15 86.7 52 76.9
MSTRG.962 Avicennia marina HOM05D002032 ORTHO05D002247 2.2e-15 86.3 52 76.9
Aqoxy6G00808 Aquilegia oxysepala HOM05D002032 ORTHO05D002247 2.8e-15 85.9 52 76.9
CANSAT01G3153 Cannabis sativa HOM05D002032 ORTHO05D002247 2.8e-15 85.9 52 76.9
CsaV3_6G045470 Cucumis sativus L. HOM05D002032 ORTHO05D002247 2.8e-15 85.9 52 76.9
Sed0019623 Sechium edule HOM05D002032 ORTHO05D002247 2.8e-15 85.9 52 76.9
TWI77G0836 Tripterygium wilfordii HOM05D002032 ORTHO05D002247 2.8e-15 85.9 52 75.0
ClCG01G018820 Citrullus lanatus HOM05D002032 ORTHO05D002247 3.7e-15 85.5 52 76.9
MELO3C007761.2 Cucumis melo HOM05D002032 ORTHO05D002247 3.7e-15 85.5 52 76.9
PSO541G6351 Papaver somniferum HOM05D002032 ORTHO05D002247 3.7e-15 85.5 52 75.0
Cfa002675 Carpinus fangiana HOM05D002032 ORTHO05D002247 4.8e-15 85.1 52 76.9
CiPaw.04G098800 Carya illinoinensis HOM05D002032 ORTHO05D002247 4.8e-15 85.1 52 75.0
AUR62004171 Chenopodium quinoa HOM05D002032 ORTHO05D002247 4.8e-15 85.1 52 76.9
AUR62013670 Chenopodium quinoa HOM05D002032 ORTHO05D002247 4.8e-15 85.1 52 76.9
Haze_24944 Corylus avellana HOM05D002032 ORTHO05D002247 4.8e-15 85.1 52 76.9
Rhsim10G0115500 Rhododendron simsii HOM05D002032 ORTHO05D002247 4.8e-15 85.1 52 75.0
vmacro09078 Vaccinium macrocarpon HOM05D002032 ORTHO05D002247 4.8e-15 85.1 52 75.0
Ciclev10025180m.g Citrus clementina HOM05D002032 ORTHO05D002247 8.2e-15 84.3 52 76.9
Duzib264G0180 Durio zibethinus HOM05D002032 ORTHO05D002247 8.2e-15 84.3 52 75.0
Os05g0421300 Oryza sativa ssp. japonica HOM05D002032 ORTHO05D002247 1.1e-14 84.0 52 75.0
RcHm_v2.0_Chr2g0114531 Rosa chinensis HOM05D002032 ORTHO05D002247 1.4e-14 83.6 52 78.8
PGR004G1459 Punica granatum HOM05D002032 ORTHO05D002247 1.8e-14 83.2 51 76.5
THA.LOC104819301 Tarenaya hassleriana HOM05D002032 ORTHO05D002247 1.8e-14 83.2 52 75.0
TWI53G1473 Tripterygium wilfordii HOM05D002032 ORTHO05D002247 1.8e-14 83.2 52 75.0
Zm00001eb183590 Zea mays HOM05D002032 ORTHO05D002247 1.8e-14 83.2 52 71.2
CSS0008079 Camellia sinensis var. sinensis HOM05D002032 ORTHO05D002247 2.4e-14 82.8 52 75.0
CiPaw.03G141300 Carya illinoinensis HOM05D002032 ORTHO05D002247 2.4e-14 82.8 46 82.6
Dinv16289 Davidia involucrata HOM05D002032 ORTHO05D002247 2.4e-14 82.8 52 75.0
Dinv21915 Davidia involucrata HOM05D002032 ORTHO05D002247 2.4e-14 82.8 52 76.9
Duzib147G1617 Durio zibethinus HOM05D002032 ORTHO05D002247 2.4e-14 82.8 53 73.6
Potri.005G076300 Populus trichocarpa HOM05D002032 ORTHO05D002247 2.4e-14 82.8 52 76.9
Sabra07G0075600 Salix brachista HOM05D002032 ORTHO05D002247 2.4e-14 82.8 52 76.9
ATR0564G187 Amborella trichopoda HOM05D002032 ORTHO05D002247 3.1e-14 82.4 47 78.7
EL10Ac1g00843 Beta vulgaris HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 75.0
COL.COLO4_09955 Corchorus olitorius HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 75.0
Gohir.A02G143500 Gossypium hirsutum HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 75.0
Gohir.D03G037000 Gossypium hirsutum HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 75.0
Gorai.003G038800 Gossypium raimondii HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 75.0
Nn1g05333 Nelumbo nucifera HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 71.2
Potri.007G092100 Populus trichocarpa HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 76.9
Hund00884 Selenicereus undatus HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 76.9
Thecc.01G102600 Theobroma cacao HOM05D002032 ORTHO05D002247 3.1e-14 82.4 52 75.0
Lj4A888T22 Lonicera japonica HOM05D002032 ORTHO05D002247 4.1e-14 82.0 47 78.7
Phvul.002G255400 Phaseolus vulgaris HOM05D002032 ORTHO05D002247 4.1e-14 82.0 52 75.0
Sed0027937 Sechium edule HOM05D002032 ORTHO05D002247 4.1e-14 82.0 48 79.2
VMungo0251G0738 Vigna mungo HOM05D002032 ORTHO05D002247 4.1e-14 82.0 52 75.0
Glyma.05G179000 Glycine max HOM05D002032 ORTHO05D002247 5.3e-14 81.6 52 75.0
THA.LOC104799015 Tarenaya hassleriana HOM05D002032 ORTHO05D002247 5.3e-14 81.6 52 75.0
Medtr0276s0010 Medicago truncatula HOM05D002032 ORTHO05D002247 9.1e-14 80.9 52 75.0
PSO781G0053 Papaver somniferum HOM05D002032 ORTHO05D002247 9.1e-14 80.9 53 73.6
Glyma.08G136500 Glycine max HOM05D002032 ORTHO05D002247 1.2e-13 80.5 52 73.1
HanXRQChr01g0023631 Helianthus annuus HOM05D002032 ORTHO05D002247 1.2e-13 80.5 50 78.0
Psat7g054360 Pisum sativum HOM05D002032 ORTHO05D002247 1.2e-13 80.5 52 75.0
TPR.G40782 Trifolium pratense HOM05D002032 ORTHO05D002247 1.2e-13 80.5 52 75.0
Ca_17733_v3 Cicer arietinum L. HOM05D002032 ORTHO05D002247 1.6e-13 80.1 52 73.1
Manes.13G075400 Manihot esculenta HOM05D002032 ORTHO05D002247 2.0e-13 79.7 52 71.2
Sc12g0007110 Simmondsia chinensis HOM05D002032 ORTHO05D002247 2.0e-13 79.7 57 70.2
Lj4g0005280 Lotus japonicus HOM05D002032 ORTHO05D002247 2.6e-13 79.3 52 73.1
Manes.12G135800 Manihot esculenta HOM05D002032 ORTHO05D002247 2.6e-13 79.3 52 71.2
Nn5g30137 Nelumbo nucifera HOM05D002032 ORTHO05D002247 2.6e-13 79.3 47 78.7
Aa31LG3G16940 Aethionema arabicum HOM05D002032 ORTHO05D002247 3.5e-13 79.0 53 69.8
Lalb_Chr13g0295991 Lupinus albus HOM05D002032 ORTHO05D002247 3.5e-13 79.0 52 73.1
Sabra05G0062900 Salix brachista HOM05D002032 ORTHO05D002247 3.5e-13 79.0 47 80.9
unitig_46.g18007 Utricularia gibba HOM05D002032 ORTHO05D002247 3.5e-13 79.0 43 83.7
DCAR_011679 Daucus carota HOM05D002032 ORTHO05D002247 4.5e-13 78.6 52 71.2
Lalb_Chr12g0203801 Lupinus albus HOM05D002032 ORTHO05D002247 4.5e-13 78.6 49 77.6
arahy.Tifrunner.gnm1.ann1.435G7Q Arachis hypogaea HOM05D002032 ORTHO05D002247 5.9e-13 78.2 47 76.6
HPP92_005998 Vanilla planifolia HOM05D002032 ORTHO05D002247 5.9e-13 78.2 52 71.2
arahy.Tifrunner.gnm1.ann1.FTL8EY Arachis hypogaea HOM05D002032 ORTHO05D002247 1.0e-12 77.4 47 76.6
Hma1.2p1_0375F.1_g139020 Hydrangea macrophylla HOM05D002032 ORTHO05D002247 1.0e-12 77.4 52 67.3
CDE04G2388 Ceratophyllum demersum HOM05D002032 ORTHO05D002247 1.3e-12 77.0 43 79.1
Psat6g143160 Pisum sativum HOM05D002032 ORTHO05D002247 1.3e-12 77.0 52 73.1
Carub.0006s0866 Capsella rubella HOM05D002032 ORTHO05D002247 2.2e-12 76.3 52 67.3
ECA248G3858 Erigeron canadensis HOM05D002032 ORTHO05D002247 3.8e-12 75.5 50 74.0
Eucgr.B01748 Eucalyptus grandis HOM05D002032 ORTHO05D002247 3.8e-12 75.5 43 81.4
SalBow6G5363 Salvia bowleyana HOM05D002032 ORTHO05D002247 3.8e-12 75.5 52 63.5
Zm00001eb245910 Zea mays HOM05D002032 ORTHO05D002247 3.8e-12 75.5 47 74.5
AL6G20690 Arabidopsis lyrata HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
AT5G10200 Arabidopsis thaliana HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
BcaB08g37132 Brassica carinata HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
BcaC04g19324 Brassica carinata HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
A10p27360 Brassica napus HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
C09p67220 Brassica napus HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
BolC9t59493H Brassica oleracea HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
BraA10t44787Z Brassica rapa HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
Thhalv10012959m.g Eutrema salsugineum HOM05D002032 ORTHO05D002247 5.0e-12 75.1 52 67.3
Oeu027631.1 Olea europaea HOM05D002032 ORTHO05D002247 6.5e-12 74.7 50 66.0
CARHR203090 Cardamine hirsuta HOM05D002032 ORTHO05D002247 8.5e-12 74.3 44 75.0
CDE12G0043 Ceratophyllum demersum HOM05D002032 ORTHO05D002247 8.5e-12 74.3 43 76.7
Sp6g33200 Schrenkiella parvula HOM05D002032 ORTHO05D002247 1.1e-11 73.9 52 65.4
BcaB05g21459 Brassica carinata HOM05D002032 ORTHO05D002247 1.5e-11 73.6 52 67.3
SEGI_27093 Sequoiadendron giganteum HOM05D002032 ORTHO05D002247 4.2e-11 72.0 52 63.5
Migut.N02927 Erythranthe guttata HOM05D002032 ORTHO05D002247 5.5e-11 71.6 47 66.0
Actinidia19888 Actinidia chinensis HOM05D002032 ORTHO05D002247 5.2e-09 65.1 47 72.3
SMO203G0226 Selaginella moellendorffii HOM05D002032 ORTHO05D002247 9.7e-08 60.8 42 61.9
BcaB05g21467 Brassica carinata HOM05D002032 ORTHO05D095316 2.2e-07 59.7 44 65.9
Mapoly0023s0091 Marchantia polymorpha HOM05D002032 ORTHO05D002247 4.1e-06 55.5 45 55.6


User provided reference genes

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