Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.4e-131 473.0 240 100.0
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.8e-107 392.9 240 82.9
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.8e-96 356.3 253 72.3
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.5e-95 352.1 251 72.1
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.4e-91 340.1 258 68.2
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.6e-90 335.9 240 70.4
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 3.4e-90 335.5 250 67.2
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.2e-89 332.8 253 68.0
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 8.3e-89 330.9 246 68.3
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-88 330.5 241 66.4
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-88 330.5 241 66.4
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 5.4e-88 328.2 248 69.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 7.0e-88 327.8 252 63.5
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.2e-87 327.0 243 67.9
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.6e-87 326.6 248 64.5
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 2.0e-87 326.2 244 65.6
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.7e-87 325.9 241 68.0
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.5e-87 325.5 241 68.0
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.0e-86 323.9 247 68.4
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.3e-86 323.6 252 65.1
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.7e-86 323.2 241 66.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.7e-86 323.2 241 67.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.3e-86 322.8 247 68.0
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 2.3e-86 322.8 242 65.7
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.3e-86 322.8 241 68.0
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 3.0e-86 322.4 254 65.7
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.0e-86 322.4 249 65.9
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.0e-86 322.4 241 68.0
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.0e-86 321.6 241 67.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 5.0e-86 321.6 250 67.2
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 5.0e-86 321.6 249 65.5
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.6e-86 321.2 241 67.6
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.6e-86 320.9 248 65.7
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 8.6e-86 320.9 260 64.6
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.1e-85 320.5 210 74.8
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.9e-85 319.7 241 67.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.9e-85 319.7 242 67.4
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 3.3e-85 318.9 272 62.5
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.3e-85 318.9 240 67.1
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 5.6e-85 318.2 239 66.5
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 7.3e-85 317.8 273 62.6
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 7.3e-85 317.8 250 64.8
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 9.5e-85 317.4 255 65.1
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.6e-84 316.6 241 65.6
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-84 315.8 251 66.9
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 4.7e-84 315.1 245 66.9
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 4.7e-84 315.1 250 62.4
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 2.3e-83 312.8 240 64.6
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 5.2e-83 311.6 268 60.8
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 6.8e-83 311.2 234 65.4
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.2e-82 310.5 242 64.5
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 2.0e-82 309.7 238 64.7
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.0e-82 309.7 241 65.1
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.4e-82 308.9 251 66.1
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.4e-82 308.9 209 72.7
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 5.8e-82 308.1 257 63.4
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.8e-82 308.1 246 62.2
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 5.8e-82 308.1 241 64.3
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 5.8e-82 308.1 192 78.1
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 7.5e-82 307.8 247 64.4
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 9.8e-82 307.4 251 61.8
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.3e-81 307.0 255 63.5
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.3e-81 307.0 268 60.4
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.7e-81 306.6 235 64.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 2.2e-81 306.2 252 64.3
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.9e-81 305.8 246 62.6
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.9e-81 305.8 238 64.3
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.7e-81 305.4 252 63.5
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 3.7e-81 305.4 281 59.4
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 6.4e-81 304.7 234 64.1
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 8.3e-81 304.3 209 72.7
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.9e-80 303.1 234 64.1
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.9e-80 303.1 236 64.4
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.2e-80 302.4 236 64.8
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 4.1e-80 302.0 234 64.1
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 4.1e-80 302.0 254 60.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 4.1e-80 302.0 251 61.0
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 7.0e-80 301.2 236 64.0
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 9.2e-80 300.8 241 63.1
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.0e-79 299.7 235 65.5
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.6e-79 298.5 252 61.9
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 4.6e-79 298.5 252 61.5
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 6.0e-79 298.1 247 62.3
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 7.8e-79 297.7 232 62.9
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 7.8e-79 297.7 233 62.7
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.0e-78 297.4 238 63.4
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.0e-78 297.4 238 62.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 2.3e-78 296.2 233 62.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 3.9e-78 295.4 345 50.7
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 3.3e-77 292.4 240 62.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.8e-76 289.3 236 61.4
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.7e-76 288.5 269 60.6
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 6.8e-75 284.6 241 59.8
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.5e-74 283.5 246 58.9
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.2e-73 279.6 245 60.4
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.4e-72 276.2 172 76.7
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 6.0e-71 271.6 248 56.5
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.0e-70 269.2 164 77.4
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.1e-68 263.1 246 54.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.2e-66 257.3 194 64.9
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 1.5e-66 256.9 211 63.0
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.6e-66 256.1 255 56.5
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 9.9e-66 254.2 238 55.0
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 4.9e-65 251.9 243 57.2
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 4.9e-65 251.9 202 63.9
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 6.4e-65 251.5 186 66.1
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 4.1e-64 248.8 186 65.1
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.3e-62 243.8 168 69.6
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.1e-62 241.9 213 55.4
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.4e-59 233.8 245 51.8
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.8e-59 233.4 139 75.5
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 2.4e-59 233.0 232 54.7
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 3.1e-59 232.6 212 58.0
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 6.9e-59 231.5 226 54.0
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 6.6e-54 214.9 162 64.2
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.5e-53 213.0 171 63.7
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.3e-52 210.7 186 54.8
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.6e-52 210.3 218 54.1
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 6.9e-51 204.9 184 58.2
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 4.5e-50 202.2 177 59.3
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 9.9e-50 201.1 188 56.9
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 7.1e-48 194.9 150 65.3
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.3e-46 190.7 146 67.1
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 3.9e-46 189.1 229 39.7
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 3.4e-42 176.0 202 51.5
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 4.5e-42 175.6 215 45.1
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 3.2e-40 169.5 154 59.1
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 2.1e-39 166.8 117 68.4
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 1.3e-38 164.1 158 58.2
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.9e-37 160.2 142 59.9
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 2.1e-36 156.8 188 50.0
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.8e-36 156.4 94 77.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 3.7e-36 156.0 129 62.8
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 3.4e-34 149.4 101 67.3
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.9e-32 143.7 169 50.3
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 5.5e-32 142.1 120 59.2
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 8.7e-30 134.8 178 42.1
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 7.4e-29 131.7 112 60.7
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 3.7e-28 129.4 115 57.4
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.2e-23 114.4 129 50.4
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.2e-23 114.4 129 50.4
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-23 114.4 185 38.9
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.3e-22 110.9 65 76.9
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.5e-21 106.7 67 71.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 5.3e-19 99.0 68 70.6
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 3.4e-18 96.3 70 65.7
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.9e-17 93.2 64 67.2
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 5.0e-17 92.4 120 48.3
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 3.3e-13 79.7 107 44.9
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 5.7e-13 79.0 52 71.2
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.2e-12 77.0 97 49.5
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.1e-11 72.8 89 48.3
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.0e-06 58.2 32 81.2


User provided reference genes

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