Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1970.7 960 100.0
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1353.2 956 72.8
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1313.5 957 70.2
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1244.2 975 66.4
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1223.4 1027 63.3
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1190.6 1010 63.0
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 987 62.9
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1183.7 989 62.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1176.0 968 63.0
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1171.8 979 62.1
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1161.0 986 62.0
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1158.7 973 62.4
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1146.7 966 61.8
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1143.3 970 62.1
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 974 61.1
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1135.6 972 61.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 974 60.6
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 980 60.5
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1132.9 1025 58.7
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1130.5 963 62.1
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1130.5 969 61.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1129.0 973 61.0
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 941 61.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1123.6 976 61.1
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 979 60.3
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 963 60.7
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1116.7 972 60.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1115.5 958 60.9
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1111.7 980 59.7
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 960 61.4
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1109.7 972 60.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 959 61.1
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1108.6 970 61.6
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1105.5 980 59.4
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 992 58.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 966 59.8
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1101.3 982 60.0
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1100.1 969 59.8
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1099.3 1003 59.0
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1097.8 995 58.7
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 957 60.0
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 1006 59.2
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 975 59.4
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1095.9 936 60.8
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1095.9 963 59.7
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1095.5 973 59.1
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1092.0 960 59.7
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 949 59.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 951 60.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1086.6 967 59.6
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 962 59.4
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 967 58.3
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 1024 57.5
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1083.9 979 58.6
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 955 59.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1082.0 976 58.7
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 965 59.9
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1080.9 1024 57.4
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1080.9 1024 57.4
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 953 60.7
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 975 58.5
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1079.3 977 59.2
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 972 58.6
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1075.1 1006 57.1
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 6.6e-312 1073.5 958 58.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 6.6e-312 1073.5 976 57.9
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 6.6e-312 1073.5 975 58.5
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 3.3e-311 1071.6 974 58.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.7e-310 1069.3 968 58.6
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 5.0e-310 1067.8 955 59.5
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 3.2e-309 1065.1 954 58.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 3.2e-309 1065.1 954 58.4
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 9.4e-309 1063.5 934 59.1
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 4.6e-308 1061.2 1047 54.6
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 6.7e-307 1057.4 967 57.4
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 3.3e-306 1055.0 977 57.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 4.4e-306 1054.7 978 57.6
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.1e-304 1050.0 949 57.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 2.4e-304 1048.9 963 59.0
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.4e-304 1048.9 906 60.5
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 4.5e-303 1044.6 959 57.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 5.9e-303 1044.3 962 57.5
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 5.9e-303 1044.3 962 57.5
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 9.4e-301 1036.9 969 57.9
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.7e-300 1035.4 898 60.8
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 7.9e-300 1033.9 961 56.5
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.5e-298 1029.6 1055 54.8
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 7.4e-298 1027.3 1071 53.6
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 4.8e-297 1024.6 972 58.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.1e-296 1023.5 996 55.5
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 1.1e-296 1023.5 1046 54.2
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 7.0e-296 1020.8 966 57.3
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 9.1e-296 1020.4 963 56.2
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.2e-295 1020.0 948 57.2
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 5.9e-295 1017.7 976 55.9
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 4.2e-293 1011.5 938 56.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 2.0e-290 1002.7 967 55.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.0e-286 988.0 967 55.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 6.5e-286 987.6 999 54.4
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 4.0e-283 978.4 993 55.1
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 3.4e-282 975.3 969 55.6
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 8.3e-281 970.7 881 58.8
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.6e-279 966.5 984 53.9
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.5e-279 965.3 990 54.0
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.7e-278 963.0 1087 51.1
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.3e-278 962.6 883 59.0
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.3e-278 962.6 1078 50.2
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.4e-275 953.4 830 61.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.4e-274 948.7 948 54.0
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 5.4e-272 941.4 838 58.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 2.0e-271 939.5 1204 47.0
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.9e-270 935.6 951 54.6
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 6.6e-254 881.3 973 51.7
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 9.9e-250 867.5 802 58.4
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.3e-237 825.5 707 61.7
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 5.6e-237 825.1 918 48.7
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 5.6e-237 825.1 952 48.4
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 2.0e-234 816.6 787 54.9
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 5.4e-232 808.5 869 49.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.9e-222 775.8 1101 41.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.1e-219 767.7 745 55.8
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 7.2e-200 701.8 423 81.6
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.5e-197 693.3 639 58.1
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.1e-187 659.4 685 55.6
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 7.0e-187 658.7 654 53.8
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.2e-165 588.2 767 45.8
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-161 574.7 378 74.6
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.0e-161 572.8 422 68.5
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-158 564.7 389 73.0
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 4.7e-127 459.9 498 54.2
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.4e-126 457.6 291 75.9
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.3e-124 451.8 600 46.8
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.1e-123 446.0 309 71.2
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.9e-120 438.0 724 39.4
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 9.6e-120 435.6 304 70.4
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.1e-113 413.3 352 61.1
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.6e-109 399.4 578 42.0
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 9.3e-99 365.9 499 44.7
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 5.1e-97 360.1 346 54.0
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-84 318.9 213 72.8
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.6e-53 215.7 163 67.5
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.0e-45 188.7 137 64.2
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 5.0e-44 184.1 119 73.9
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.2e-43 180.3 222 43.2
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 4.1e-38 164.5 134 58.2
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.4e-32 144.8 124 56.5
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.2e-31 142.1 89 73.0
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-26 126.3 76 77.6
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-25 122.5 295 35.3
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.1e-25 121.7 86 66.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-24 119.0 111 52.3
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.1e-17 95.1 165 37.6
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 2.6e-16 92.0 67 62.7
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.9e-14 85.9 281 28.5
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 7.1e-14 84.0 52 71.2
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 9.2e-14 83.6 47 76.6
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.3e-11 74.7 82 48.8
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.1e-10 72.4 66 47.0
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 4.7e-10 71.2 64 53.1
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.3e-07 63.2 50 54.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.7e-07 62.8 62 50.0
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.8e-07 61.6 73 49.3
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 1.9e-06 59.3 148 33.1
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 3.2e-06 58.5 53 52.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 9.3e-06 57.0 52 53.8


User provided reference genes

Program Settings